caRpools : CRISPR AnalyzeR for Pooled CRISPR Screens

Package: caRpools
Type: Package
Title: CRISPR AnalyzeR for Pooled CRISPR Screens
Version: 0.83
Date: 2015-12-06
Author: Jan Winter, Florian Heigwer
Maintainer: Jan Winter <jan.winter@dkfz-heidelberg.de>
Description: CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See <https://en.wikipedia.org/wiki/CRISPR> for more information on
CRISPR.
Depends: R (>= 3.1.0)
Imports:
rmarkdown,VennDiagram,DESeq2,sm,biomaRt,seqinr,scatterplot3d,xlsx
Suggests: BiocGenerics, knitr, stringi
SystemRequirements: MAGeCK (=0.51, from
http://sourceforge.net/p/mageck/wiki/Home/), bowtie2
(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
License: GPL
URL: http://www.crispr-analyzer.de
https://github.com/boutroslab/caRpools
BugReports: https://github.com/boutroslab/caRpools
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-12-05 18:38:31 UTC; janwinter
Repository: CRAN
Date/Publication: 2015-12-06 13:31:59