Package: triplex
Type: Package
Title: Search and visualize intramolecular triplex-forming sequences in
DNA
Version: 1.12.0
Date: 2013-09-28
Authors@R: c(person("Jiri", "Hon", role = c("aut", "cre"),
email = "jiri.hon@gmail.com"),
person("Matej", "Lexa", role = "aut",
email = "lexa@fi.muni.cz"),
person("Tomas", "Martinek", role = "aut",
email = "martinto@fit.vutbr.cz"),
person("Kamil", "Rajdl", role = "aut"),
person("Daniel", "Kopecek", role = "ctb"))
Author: Jiri Hon, Matej Lexa, Tomas Martinek and Kamil Rajdl with contributions from Daniel Kopecek
Maintainer: Jiri Hon <jiri.hon@gmail.com>
Description: This package provides functions for identification and
visualization of potential intramolecular triplex patterns in DNA sequence.
The main functionality is to detect the positions of subsequences capable of
folding into an intramolecular triplex (H-DNA) in a much larger sequence.
The potential H-DNA (triplexes) should be made of as many cannonical
nucleotide triplets as possible. The package includes visualization showing
the exact base-pairing in 1D, 2D or 3D.
License: BSD_2_clause + file LICENSE
URL: http://www.fi.muni.cz/~lexa/triplex/
biocViews: SequenceMatching, GeneRegulation
Depends: R (>= 2.15.0), S4Vectors (>= 0.5.14), IRanges (>= 2.5.27), XVector (>= 0.11.6), Biostrings (>= 2.39.10)
Imports: methods, grid, GenomicRanges
Suggests: rgl (>= 0.93.932), BSgenome.Celegans.UCSC.ce10, rtracklayer, GenomeGraphs
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
NeedsCompilation: yes
Packaged: 2016-05-05 03:50:37 UTC; biocbuild
providing 
.