Package: RcmdrPlugin.BiclustGUI
Type: Package
Title: 'Rcmdr' Plug-in GUI for Biclustering
Version: 1.0.4
Date: 2016-06-26
Author: De Troyer Ewoud, Otava Martin
Maintainer: De Troyer Ewoud <ewoud.detroyer@uhasselt.be>
Description: A plug-in for R Commander ('Rcmdr'). The package is a Graphical User Interface (GUI) in which several biclustering methods can be executed, followed by diagnostics and plots of the results. Further, the GUI also has the possibility to connect the methods to more general diagnostic packages for biclustering. Biclustering methods from 'biclust', 'fabia', 's4vd', 'iBBiG', 'isa2', 'rqubic' and 'BicARE' are implemented. Additionally, 'superbiclust' and 'BcDiag' are also implemented to be able to further investigate results. The GUI also provides a couple of extra utilities to export, save, search through and plot the results. 'RcmdrPlugin.BiclustGUI' also provides a very specific framework for biclustering in which new methods, diagnostics and plots can be added. Scripts were prepared so that R-package developers can freely design their own dialogs in the GUI which can then be added by the maintainer of 'RcmdrPlugin.BiclustGUI'. These scripts do not required any knowledge of 'tcltk' and 'Rcmdr' and are easy to fill in.
License: GPL-3
Depends: biclust, fabia, iBBiG, superbiclust (>= 1.1), BcDiag (>= 1.0.10), rqubic, BicARE, s4vd
Imports: Rcmdr, tcltk, gplots, grDevices, graphics, methods, utils
VignetteBuilder: knitr
Suggests: knitr
NeedsCompilation: no
Packaged: 2016-06-27 05:25:54 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: biclustgui
Repository/R-Forge/Revision: 78
Repository/R-Forge/DateTimeStamp: 2016-06-27 05:08:48
Date/Publication: 2016-06-28 07:51:05
Package: superbiclust
Type: Package
Title: Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
Version: 1.1
Date: 2012-08-23
Author: Tatsiana Khamiakova
Maintainer: Tatsiana Khamiakova <tatsiana.khamiakova@uhasselt.be>
Depends: biclust, fabia
Imports: methods, Matrix
Description: Biclusters are submatrices in the data matrix which
satisfy certain conditions of homogeneity. Package contains
functions for generating robust biclusters with respect to the
initialization parameters for a given bicluster solution
contained in a bicluster set in data, the procedure is also
known as ensemble biclustering. The set of biclusters is
evaluated based on the similarity of its elements (the
overlap), and afterwards the hierarchical tree is constructed
to obtain cut-off points for the classes of robust biclusters.
The result is a number of robust (or super) biclusters with
none or low overlap.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-11-27 15:45:10 UTC; rforge
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-27 23:20:02
Repository/R-Forge/Project: superbiclust
Repository/R-Forge/Revision: 14
Repository/R-Forge/DateTimeStamp: 2014-11-27 15:39:29
Package: s4vd
Version: 1.1-1
Title: Biclustering via Sparse Singular Value Decomposition
Incorporating Stability Selection
Date: 2015-11-11
Author: Martin Sill, Sebastian Kaiser
Maintainer: Martin Sill <m.sill@dkfz.de>
Depends: biclust, methods, irlba, foreach
Description: The main function s4vd() performs a biclustering via sparse
singular value decomposition with a nested stability selection.
The results is an biclust object and thus all methods of the
biclust package can be applied.
License: GPL-2
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: s4vd
Repository/R-Forge/Revision: 109
Repository/R-Forge/DateTimeStamp: 2015-11-18 10:48:14
Date/Publication: 2015-11-19 17:15:53
NeedsCompilation: no
Packaged: 2015-11-18 11:10:38 UTC; rforge
providing 
.