Last data update: 2014.03.03

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Results 1 - 10 of 38 found.
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gclus : Clustering Graphics

Package: gclus
Version: 1.3.1
Author: Catherine Hurley
Date: 2012-06-25
Maintainer: Catherine Hurley <catherine.hurley@nuim.ie>
Title: Clustering Graphics
Description: Orders panels in scatterplot matrices and parallel
coordinate displays by some merit index. Package contains
various indices of merit, ordering functions, and enhanced
versions of pairs and parcoord which color panels according to
their merit level.
Depends: R (>= 2.10), cluster
License: GPL (>= 2)
Packaged: 2012-06-25 16:30:56 UTC; catherin
Repository: CRAN
Date/Publication: 2012-06-25 16:50:15

● Data Source: CranContrib
● Cran Task View: Graphics, Multivariate
● 0 images, 13 functions, 4 datasets
Reverse Depends: 1

geneSignatureFinder : A Gene-signatures finder tools

Package: geneSignatureFinder
Type: Package
Title: A Gene-signatures finder tools
Version: 2014.02.17
Date: 2012-08-20
Author: Stefano M. Pagnotta, Michele Ceccarelli
Maintainer: Stefano M. Pagnotta <pagnotta@unisannio.it>
Description: A tool for finding an ensemble gene-signature by a steepest ascending algorithm partially supervised by survival time data.
License: GPL-2
Depends: R (>= 3.0.0), survival, cluster, class, parallel
Suggests:
URL: http://www.bioinformatics.unisannio.it/gsf
BugReports: http://www.bioinformatics.unisannio.it/gsf
Packaged: 2014-03-07 09:41:13 UTC; stefano
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-07 11:58:47

● Data Source: CranContrib
● 0 images, 14 functions, 2 datasets
● Reverse Depends: 0

nomclust : Hierarchical Nominal Clustering Package

Package: nomclust
Title: Hierarchical Nominal Clustering Package
Version: 0.91.1010
Date: 2015-6-2
Author: Sulc Zdenek <zdenek.sulc@vse.cz>, Rezankova Hana <hana.rezankova@vse.cz>
Maintainer: Sulc Zdenek <zdenek.sulc@vse.cz>
Description: Package for hierarchical clustering of objects characterized by nominal variables.
Depends: cluster, dummies
License: GPL (>= 2)
Packaged: 2015-06-02 14:34:08 UTC; zdenek
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-06-03 08:46:53

● Data Source: CranContrib
● 0 images, 13 functions, 1 datasets
● Reverse Depends: 0

maptree : Mapping, pruning, and graphing tree models

Package: maptree
Version: 1.4-7
Date: 2012-11-24
Title: Mapping, pruning, and graphing tree models
Author: Denis White, Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Maintainer: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Depends: R (>= 2.14), cluster, rpart
Description: Functions with example data for graphing, pruning, and
mapping models from hierarchical clustering, and classification
and regression trees.
License: Unlimited
Packaged: 2012-11-24 18:43:40 UTC; bobby
Repository: CRAN
Date/Publication: 2012-11-26 07:28:04

● Data Source: CranContrib
● Cran Task View: Environmetrics, MachineLearning
● 0 images, 11 functions, 5 datasets
● Reverse Depends: 0

knnGarden : Multi-distance based k-Nearest Neighbors

Package: knnGarden
Type: Package
Title: Multi-distance based k-Nearest Neighbors
Version: 1.0.1
Date: 2012-05-16
Author: Boxian Wei & Fan Yang & Xinmiao Wang & Yanni Ge
Special Acknowledgement: Zhihong Huang & Weixian Jing
Maintainer: Boxian Wei<boxianwei@gmail.com>
Description: Multi-distance based k-Nearest Neighbors Classification
with K Threshold Value Check and Same K_i Problem Dealing,
Missing Observations Filling
License: GPL (>= 2)
Depends: cluster
Imports: stats
Packaged: 2012-07-13 11:56:28 UTC; BOXIANWEI
Repository: CRAN
Date/Publication: 2012-07-13 12:42:02

● Data Source: CranContrib
● 0 images, 3 functions, 0 datasets
● Reverse Depends: 0

labdsv : Ordination and Multivariate Analysis for Ecology

Package: labdsv
Version: 1.8-0
Date: 2016-01-21
Title: Ordination and Multivariate Analysis for Ecology
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: R (>= 2.10), mgcv, MASS, cluster
Suggests: optpart
Description: A variety of ordination and community analyses
useful in analysis of data sets in community ecology.
Includes many of the common ordination methods, with
graphical routines to facilitate their interpretation,
as well as several novel analyses.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
Packaged: 2016-01-23 16:20:16 UTC; dvrbts
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-01-24 15:45:28

● Data Source: CranContrib
● Cran Task View: Psychometrics
● 0 images, 38 functions, 2 datasets
Reverse Depends: 3

MiSPU : Microbiome Based Sum of Powered Score (MiSPU) Tests

Package: MiSPU
Type: Package
Title: Microbiome Based Sum of Powered Score (MiSPU) Tests
Version: 1.0
Date: 2016-02-29
Author: Chong Wu, Wei Pan
Maintainer: Chong Wu <wuxx0845@umn.edu>
Description: There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.
License: GPL-2
Imports: Rcpp (>= 0.12.1)
Depends: R (>= 3.2.3), vegan, ape, aSPU, cluster
Suggests: ade4
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2016-03-17 18:15:15 UTC; chong
Repository: CRAN
Date/Publication: 2016-03-18 00:08:39

● Data Source: CranContrib
● 0 images, 7 functions, 4 datasets
● Reverse Depends: 0

NMF : Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

Package: NMF
Type: Package
Title: Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Version: 0.20.6
Date: 2015-05-25
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Renaud Gaujoux <renaud@tx.technion.ac.il>
Description: Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.
License: GPL (>= 2)
URL: http://renozao.github.io/NMF
BugReports: http://github.com/renozao/NMF/issues
SCM: github:renozao, r-forge
LazyLoad: yes
VignetteBuilder: knitr
Depends: R (>= 3.0.0), methods, utils, pkgmaker (>= 0.20), registry,
rngtools (>= 1.2.3), cluster
Imports: graphics, stats, stringr (>= 1.0.0), digest, grid, grDevices,
gridBase, colorspace, RColorBrewer, foreach, doParallel,
ggplot2, reshape2
Suggests: RcppOctave (>= 0.11), fastICA, doMPI, bigmemory (>= 4.2),
synchronicity, corpcor, xtable, devtools, knitr, bibtex, RUnit,
mail, Biobase
Collate: 'rmatrix.R' 'nmf-package.R' 'utils.R' 'versions.R'
'algorithmic.R' 'options.R' 'grid.R' 'colorcode.R' 'atracks.R'
'aheatmap.R' 'NMF-class.R' 'transforms.R' 'Bioc-layer.R'
'NMFstd-class.R' 'NMFOffset-class.R' 'registry.R' 'heatmaps.R'
'NMFns-class.R' 'nmfModel.R' 'fixed-terms.R' 'NMFfit-class.R'
'NMFSet-class.R' 'NMFStrategy-class.R' 'NMFSeed-class.R'
'NMFStrategyFunction-class.R' 'NMFStrategyIterative-class.R'
'NMFStrategyOctave-class.R' 'NMFplots.R'
'registry-algorithms.R' 'algorithms-base.R'
'algorithms-brunet.R' 'algorithms-lnmf.R' 'algorithms-lsnmf.R'
'algorithms-pe-nmf.R' 'algorithms-siNMF.R' 'algorithms-snmf.R'
'data.R' 'extractFeatures.R' 'registry-seed.R' 'parallel.R'
'nmf.R' 'rnmf.R' 'run.R' 'seed-base.R' 'seed-ica.R'
'seed-nndsvd.R' 'setNMFClass.R' 'simulation.R' 'tests.R'
Packaged: 2015-05-25 21:34:47 UTC; renaud
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-26 08:12:33

● Data Source: CranContrib
26 images, 130 functions, 1 datasets
Reverse Depends: 2

MSeasy : Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data

Package: MSeasy
Type: Package
Title: Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data
Version: 5.3.3
Date: 2013-03-18
Depends: amap, clValid, cluster, fpc, mzR, xcms
Suggests: tcltk
Author: Elodie Courtois <courtoiselodie@gmail.com>, Yann Guitton
<yann.guitton@gmail.com>, Florence Nicole
<florence.nicole@univ-st-etienne.fr>
Maintainer: Yann GUITTON <yann.guitton@gmail.com>
Description: Package for the detection of molecules in complex mixtures
of compounds. It creates an initial_DATA matrix from several
GC-MS analyses by collecting and assembling the information
from chromatograms and mass spectra (MS.DataCreation), It can
read several format (ASCII, CDF, mzML, mzXML or mzData).It
tests for the best unsupervised clustering method to group
similar mass spectra into molecules (MS.test.clust).It runs the
optimal unsupervised clustering method on the initial_DATA
matrix, identifies the optimal number of clusters, produces
different files for facilitating the quality control and
identification of putative molecules, and returns
fingerprinting or profiling matrices (MS.clust).It converts
output files from MS.clust for NIST mass spectral library
search and ARISTO webtool search
License: GPL-2
URL: http://sites.google.com/site/rpackagemseasy/
LazyData: yes
Packaged: 2013-03-19 16:52:04 UTC; chimimar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-20 17:07:31

● Data Source: CranContrib
● 0 images, 8 functions, 7 datasets
Reverse Depends: 1

FactoMineR : Multivariate Exploratory Data Analysis and Data Mining

Package: FactoMineR
Version: 1.33
Date: 2016-05-18
Title: Multivariate Exploratory Data Analysis and Data Mining
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Depends: R (>= 2.12.0)
Imports:
car,cluster,ellipse,flashClust,graphics,grDevices,lattice,leaps,MASS,scatterplot3d,stats,data.table,dplyr,knitr
Suggests: missMDA
Description: Exploratory data analysis methods such as principal component methods and clustering.
License: GPL (>= 2)
URL: http://factominer.free.fr
Encoding: latin1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-18 07:46:18 UTC; husson
Repository: CRAN
Date/Publication: 2016-05-18 10:35:55

● Data Source: CranContrib
● Cran Task View: Multivariate, Psychometrics
25 images, 66 functions, 15 datasets
Reverse Depends: 6