AssocTests : Genetic Association Studies

Package: AssocTests
Type: Package
Title: Genetic Association Studies
Version: 0.0-3
Date: 2015-08-08
Author: Lin Wang [aut],
Wei Zhang [aut],
Qizhai Li [aut],
Weicheng Zhu [ctb]
Maintainer: Lin Wang <wanglin2009@amss.ac.cn>
Depends: cluster, mvtnorm, combinat, fExtremes, R (>= 2.10.0)
Description: Some procedures including EIGENSTRAT (a procedure for
detecting and correcting for population stratification through
searching for the eigenvectors in genetic association studies),
PCoC (a procedure for correcting for population stratification
through calculating the principal coordinates and the clustering
of the subjects), Tracy-Wisdom test (a procedure for detecting
the significant eigenvalues of a matrix), distance regression (a
procedure for detecting the association between a distance matrix
and some independent variants of interest), single-marker test (a
procedure for identifying the association between the genotype at
a biallelic marker and a trait using the Wald test or the Fisher
exact test), MAX3 (a procedure for testing for the association
between a single nucleotide polymorphism and a binary phenotype
using the maximum value of the three test statistics derived for
the recessive, additive, and dominant models), nonparametric trend
test (a procedure for testing for the association between a genetic
variant and a non-normal distributed quantitative trait based on the
nonparametric risk), and nonparametric MAX3 (a procedure for testing
for the association between a biallelic single nucleotide polymorphism
and a quantitative trait using the maximum value of the three
nonparametric trend tests derived for the recessive, additive, and
dominant models), which are commonly used in genetic association studies.
License: GPL-2
Collate: 'AssociationTestWithCorrectPS.R' 'CalculateGapK.R'
'CalculateWAll.R' 'CalExpect.R' 'ChangeX.R' 'CorrMatNRTest.R'
'DR_main.R' 'EigenStrat_main.R' 'FindCNumRandom.R'
'MAX3_main.R' 'MAX3Sign.R' 'MDS.R' 'PCoC_main.R'
'ModifyNormalization.R' 'NMAX3_main.R' 'NPT_main.R'
'RhombusFormula.R' 'ScoreTest.R' 'SimilarityMatrix.R'
'SMT_main.R' 'Str2Num.R' 'TrendTest.R' 'TW_main.R'
'UniformSample.R' 'UniformTest.R' 'WaldTest.R'
NeedsCompilation: no
Packaged: 2015-08-08 10:43:17 UTC; Administrator
Repository: CRAN
Date/Publication: 2015-08-08 15:39:20