Package: metabolomics
Type: Package
Title: Analysis of Metabolomics Data
Version: 0.1.4
Date: 2014-12-27
Author: Alysha M De Livera and Jairus B Bowne
Maintainer: Alysha M De Livera <alyshad@unimelb.edu.au>
Description: A collection of functions to aid in the statistical analysis of metabolomic data
License: GPL-2 | GPL-3
LazyLoad: yes
Depends: limma, crmn, gplots, R (>= 3.1.0)
Packaged: 2014-12-29 18:19:26 UTC; alyshad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-29 19:25:29
Package: DandEFA
Type: Package
Title: Dandelion Plot for R-Mode Exploratory Factor Analysis
Version: 1.6
Date: 2016-03-14
Author: Artur Manukyan, Ahmet Sedef, Erhan Cene, Ibrahim Demir
Depends: R (>= 3.2.3), gplots, polycor
Maintainer: Artur Manukyan <artur-man@hotmail.com>
Description: Contains the function used to create the Dandelion Plot. Dandelion Plot is a visualization method for R-mode Exploratory Factor Analysis.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-03-14 08:33:37 UTC; Artur
Repository: CRAN
Date/Publication: 2016-03-14 12:57:57
Package: DiagTest3Grp
Type: Package
Title: Diagnostic test summary measures for three ordinal groups
Version: 1.6
Date: 2014-02-20
Author: Jingqin Luo, Chengjie Xiong
Maintainer: Jingqin Luo<rosy@wubios.wustl.edu>
Description: The R package provides utilities to estimate and make inference on two summary measures for diagnostic tests when there are three ordinal groups ----volume under ROC surface (VUS) and the extended Youden index, assuming that diagnostic markers increase monotonically and stochastically with disease severity. Point estimates, variance, confidence interval and optimal cut-points both under the normal assumption and also the non-parametric method(s) will be provided for the summary measures. Statistical tests are implemented to compare multiple diagnostic tests and two diagnostic test. Sample size is calculated to estimate the summary measures within a user-specified margin of error for future study planning.
License: GPL (>= 2.0)
Depends: car, KernSmooth, stats, gplots
LazyLoad: yes
Packaged: 2014-02-20 21:20:09 UTC; rosy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-20 22:40:48
Package: MDplot
Version: 0.3.1
Date: 2016-04-28
Authors@R: person( given = "Christian", family = "Margreitter",
email = "christian.margreitter@gmail.com", role = c( "aut", "cre" ) )
Title: Visualising Molecular Dynamics Analyses
Depends: R (>= 3.0.0), methods, MASS, RColorBrewer, gplots, gtools
Description: Provides automatization for plot generation succeeding common molecular dynamics analyses.
This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and
RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as
dihedral angle maps, hydrogen bonds, cluster bar plots and
DSSP (Definition of Secondary Structure of Proteins) analysis.
License: GPL-3
URL: https://github.com/MDplot/MDplot
LazyLoad: yes
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter@gmail.com>
NeedsCompilation: no
Repository: CRAN
Packaged: 2016-04-28 12:34:05 UTC; margreitterc
Date/Publication: 2016-04-28 15:55:21
Package: Meth27QC
Type: Package
Title: Meth27QC: sample quality analysis, and sample control analysis
Version: 1.1
Date: 2010-12-25
Author: Ling Teng, Chao Chen, Chunyu Liu
Maintainer: Ling Teng <tenglingling@gmail.com>
Description: Meth27QC is a tool for analyzing Illumina Infinium
HumanMethylation27 BeadChip Data and generating QC reports.
This package allows users quickly assess data quality of the
Assay. Users can evaluate the data quality in the way that
Illumina GenomeStudio/BeadStudio recommended based on the
control probes. The package reads files exported from
GenomeStudio/BeadStudio software, generating intensity and
standard deviation plots grouped by the types of the control
probes. Meth27 carries 40 control probes for staining,
hybridization, target removal, extension, bisulfite conversion,
specificity, negative and non-polymorphic controls. Details of
those control probes can be found in the Infinium Assay for
Methylation Protocol Guide from Illumina.We also used the other
non-control probes to plot intensity of detected genes, signal
average for green and red. Outliers can be identified.
Depends: gplots, tcltk
License: GPL-2
Packaged: 2011-02-16 19:10:39 UTC; happyfamily
Repository: CRAN
Date/Publication: 2011-02-18 07:26:56
Package: PRISMA
Type: Package
Title: Protocol Inspection and State Machine Analysis
Version: 0.2-5
Date: 2015-03-15
Depends: R (>= 2.10), Matrix, gplots, ggplot2
Suggests: tm (>= 0.6)
Author: Tammo Krueger, Nicole Kraemer
Maintainer: Tammo Krueger <tammokrueger@googlemail.com>
Description: The PRISMA package is capable of loading and processing huge text
corpora processed with the sally toolbox (http://www.mlsec.org/sally/).
sally acts as a very fast preprocessor which splits the text files into
tokens or n-grams. These output files can then be read with the PRISMA
package which applies testing-based token selection and has some
replicate-aware, highly tuned non-negative matrix factorization and
principal component analysis implementation which allows the processing of
very big data sets even on desktop machines.
License: GPL (>= 2.0)
Packaged: 2015-03-15 17:10:11 UTC; tammok
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-16 10:18:54
providing 
.