ToPASeq : Package for Topology-based Pathway Analysis of RNASeq data

Package: ToPASeq
Type: Package
Title: Package for Topology-based Pathway Analysis of RNASeq data
Version: 1.6.0
Date: 2015-12-02
Author: Ivana Ihnatova, Eva Budinska
Maintainer: Ivana Ihnatova <ihnatova@iba.muni.cz>
Description: Implementation of seven methods for topology-based pathway
analysis of both RNASeq and microarray data: SPIA, DEGraph,
TopologyGSA, TAPPA, PRS, PWEA and a visualization tool for a
single pathway.
Depends: graphite (>= 1.16), gRbase, graph, locfit, Rgraphviz
Imports: R.utils, methods, Biobase, parallel, edgeR, DESeq2,
SummarizedExperiment, RBGL, DESeq, fields, limma,
TeachingDemos, KEGGgraph, qpgraph, clipper, AnnotationDbi,
doParallel
Suggests: RUnit, BiocGenerics, gageData, DEGraph, plotrix, org.Hs.eg.db
LinkingTo: Rcpp
LazyData: yes
License: AGPL-3
biocViews: Software, GeneExpression, NetworkEnrichment,
GraphAndNetwork, RNASeq, Visualization, Microarray, Pathways,
DifferentialExpression,
NeedsCompilation: yes
Packaged: 2016-05-04 05:57:10 UTC; biocbuild