Package: ldlasso
Type: Package
Title: LD LASSO Regression for SNP Association Study
Version: 3.2
Date: Jan. 2, 2013
Author: Samuel G. Younkin
Maintainer: Samuel G. Younkin <samuel.younkin@gmail.com>
Description: ldlasso requires data be of class gwaa.data from the the
package GenABEL
License: GPL (>= 2)
Depends: R (>= 2.6.0), GenABEL, quadprog
LazyLoad: yes
Packaged: 2013-01-02 20:20:29 UTC; sgy
Repository: CRAN
Date/Publication: 2013-01-03 08:23:20
Package: kappalab
Version: 0.4-7
Date: 2015-07-18
Title: Non-Additive Measure and Integral Manipulation Functions
Author: Michel Grabisch, Ivan Kojadinovic, Patrick Meyer.
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Description: S4 tool box for capacity (or non-additive measure, fuzzy measure) and integral manipulation in a finite setting. It contains routines for handling various types of set functions such as games or capacities. It can be used to compute several non-additive integrals: the Choquet integral, the Sugeno integral, and the symmetric and asymmetric Choquet integrals. An analysis of capacities in terms of decision behavior can be performed through the computation of various indices such as the Shapley value, the interaction index, the orness degree, etc. The well-known Möbius transform, as well as other equivalent representations of set functions can also be computed. Kappalab further contains seven capacity identification routines: three least squares based approaches, a method based on linear programming, a maximum entropy like method based on variance minimization, a minimum distance approach and an unsupervised approach based on parametric entropies. The functions contained in Kappalab can for instance be used in the framework of multicriteria decision making or cooperative game theory.
Depends: R (>= 2.1.0), methods, lpSolve, quadprog, kernlab
Encoding: latin1
License: CeCILL
NeedsCompilation: yes
Packaged: 2015-07-18 10:54:47 UTC; ikojadin
Repository: CRAN
Date/Publication: 2015-07-18 17:00:04
Package: kinship2
Version: 1.6.4
Date: 2015-08-03
Title: Pedigree Functions
Authors@R: c(person(c("Terry", "M"), "Therneau", role=c("aut")),
person("Schaid", "Daniel", role="ctb"),
person("Jason", "Sinnwell", email="sinnwell.jason@mayo.edu",role=c("aut","cre")),
person("Elizabeth", "Atkinson", role="ctb"))
Depends: R (>= 3.1.0), Matrix, quadprog
Imports: graphics, stats, methods
Description: Routines to handle family data with a pedigree object. The initial purpose was to create correlation structures that describe
family relationships such as kinship and identity-by-descent, which
can be used to model family data in mixed effects models, such as in the
coxme function. Also includes a tool for pedigree drawing which is
focused on producing compact layouts without intervention. Recent additions
include utilities to trim the pedigree object with various criteria, and
kinship for the X chromosome.
LazyData: yes
License: GPL (>= 2)
URL: http://r-forge.r-project.org
NeedsCompilation: no
Packaged: 2015-08-03 17:03:47 UTC; sinnwell
Author: Terry M Therneau [aut],
Schaid Daniel [ctb],
Jason Sinnwell [aut, cre],
Elizabeth Atkinson [ctb]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Repository: CRAN
Date/Publication: 2015-08-03 21:10:46
Package: ShapeChange
Type: Package
Title: Change-Point Estimation using Shape-Restricted Splines
Version: 1.3
Date: 2016-03-19
Author: Xiyue Liao and Mary C Meyer
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Description: In a scatterplot where the response variable is Gaussian, Poisson or binomial, we consider the case in which the mean function is smooth with a change-point, which is a mode, an inflection point or a jump point. The main routine estimates the mean curve and the change-point as well using shape-restricted B-splines. An optional subroutine delivering a bootstrap confidence interval for the change-point is incorporated in the main routine.
License: GPL (>= 2)
Depends: coneproj (>= 1.8), quadprog (>= 1.5-5), R (>= 3.2.0)
NeedsCompilation: no
Suggests: stats, MASS, graphics, grDevices, utils
Packaged: 2016-03-20 02:14:20 UTC; xiyue
Repository: CRAN
Date/Publication: 2016-03-20 16:38:42
Package: SEL
Type: Package
Title: Semiparametric elicitation
Version: 1.0-2
Date: 2010-05-22
Depends: splines, quadprog, lattice
Author: Bjoern Bornkamp
Maintainer: Bjoern Bornkamp <bornkamp@statistik.tu-dortmund.de>
Description: This package implements a novel method for fitting a
bounded probability distribution to quantiles (for example
stated by an expert), see Bornkamp and Ickstadt (2009) for
details. For this purpose B-splines are used, and the density
is obtained by penalized least squares based on a Brier entropy
penalty. The package provides methods for fitting the
distribution as well as methods for evaluating the underlying
density and cdf. In addition methods for plotting the
distribution, drawing random numbers and calculating quantiles
of the obtained distribution are provided.
License: GPL
Packaged: 2010-05-22 19:23:56 UTC; bjoern
Repository: CRAN
Date/Publication: 2010-05-23 07:10:59
Package: cosso
Version: 2.1-1
Date: 2013-03-10
Title: Fit Regularized Nonparametric Regression Models Using COSSO
Penalty.
Author: Hao Helen Zhang <hzhang@math.arizona.edu> and Chen-Yen Lin
<clin5@ncsu.edu>
Maintainer: Chen-Yen Lin <clin5@ncsu.edu>
Description: COSSO is a new regularization method that automatically
estimates and selects important function components by a
soft-thresholding penalty in the context of smoothing spline
ANOVA models. Implemented models include mean regression,
quantile regression, logistic regression and the Cox regression
models.
License: GPL (>= 2)
Depends: quadprog, Rglpk, parallel, glmnet
URL: http://www4.stat.ncsu.edu/~hzhang/cosso.html
Packaged: 2013-03-11 01:37:06 UTC; ChenYen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-11 07:44:02