Package: gemtc.jar
Version: 0.14.3
Date: 2013-01-14
Title: GeMTC Java binary
Author: Gert van Valkenhoef, Joel Kuiper
Maintainer: Gert van Valkenhoef <g.h.m.van.valkenhoef@rug.nl>
Description: An R package providing the Java JAR for the gemtc package
Depends: R (>= 2.7.0), rJava (>= 0.8-0)
SystemRequirements: Java (>= 1.5)
License: GPL-3
Packaged: 2013-01-21 11:00:27 UTC; joel
Repository: CRAN
Date/Publication: 2013-01-21 19:10:00
Package: mallet
Type: Package
Title: A wrapper around the Java machine learning tool MALLET
Version: 1.0
Date: 2013-07-18
Author: David Mimno
Maintainer: David Mimno <mimno@cornell.edu>
Description: This package allows you to train topic models in mallet and load results directly into R.
License: MIT + file LICENSE
SystemRequirements: java
Depends: rJava
Packaged: 2013-08-09 14:33:02 UTC; mimno
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-08-09 16:46:59
Package: MSIseq
Maintainer: Mini Huang <mini.huang@nus.edu.sg>
License: GPL (>= 2)
Title: Assess Tumor Microsatellite Instability with a Decision Tree
Classifier from Exome Somatic Mutations
Type: Package
Author: Mini Huang
Description: A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.
SystemRequirements: Java
Version: 1.0.0
biocViews: Classification, SomaticMutation, Sequencing
Depends: IRanges, RWeka, rJava, R.utils, R (>= 3.2.0)
Date: 2015-06-10
NeedsCompilation: no
Packaged: 2015-06-15 12:10:59 UTC; minihuang
Repository: CRAN
Date/Publication: 2015-06-15 16:26:10
Package: ENMeval
Type: Package
Title: Automated Runs and Evaluations of Ecological Niche Models
Version: 0.2.1
Date: 2016-1-4
Author: Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Maintainer: Robert Muscarella <bob.muscarella@gmail.com>
Description: Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006).
License: GPL
Depends: dismo, methods, rJava (>= 0.5-0), parallel, R (>= 2.10)
Imports: doParallel, foreach, utils, graphics, stats, grDevices, raster
NeedsCompilation: no
Packaged: 2016-01-04 14:40:27 UTC; Bob
Repository: CRAN
Date/Publication: 2016-01-04 16:08:51
Package: REPPlab
Type: Package
Title: R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Version: 0.9.3
Date: 2015-11-30
Author: Daniel Fischer, Alain Berro, Klaus Nordhausen, Anne Ruiz-Gazen
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Depends: R (>= 2.15.1), rJava, lattice, LDRTools (>= 0.2), utils, graphics
Suggests: tourr, amap
Description: An R Interface to 'EPP-lab' v1.0. 'EPP-lab' is a Java program for
projection pursuit using genetic algorithms written by Alain Berro and S. Larabi
Marie-Sainte and is included in the package. The 'EPP-lab' sources are available
under https://github.com/fischuu/EPP-lab.git.
License: GPL (>= 2)
Encoding: latin1
NeedsCompilation: no
Repository: CRAN
RoxygenNote: 5.0.0
Packaged: 2015-11-30 08:00:23 UTC; ejo138
Date/Publication: 2015-11-30 13:09:10
Package: SBRect
Version: 0.26
Date: 2014-02-07
Title: Detecting structural breaks using rectangle covering
(non-parametric method).
Authors@R: c(person("Paul", "Fischer", role = c("aut", "cre","cph"),
email = "pafi@dtu.dk"),person("Astrid", "Hilbert", role = c("ctb","cph"),
email = "astrid.hilbert@lnu.se"))
Author: Paul Fischer [aut, cre, cph],
Astrid Hilbert [ctb, cph]
Maintainer: Paul Fischer <pafi@dtu.dk>
Depends: rJava
SystemRequirements: java
Suggests: MASS
Description: The package uses fitting axes-aligned rectangles to a time series in order to find structural breaks. The algorithm enclose the time series in a number of axes-aligned rectangles and tries to minimize their area and number. As these are conflicting aims, the user has to specify a parameter alpha in [0.0,1.0]. Values close to 0 result in more breakpoints, values close to 1 in fewer. The left edges of the rectangles are the breakpoints. The package supplies two methods, computeBreakPoints(series,alpha) which returns the indices of the break points and computeRectangles(series,alpha) which returns the rectangles. The algorithm is randomised; it uses a genetic algorithm. Therefore, the break point sequence found can be different in different executions of the method on the same data, especially when used on longer series of some thousand observations. The algorithm uses a range-tree as background data structure which makes i very fast and suited to analyse series with millions of observations. A detailed description can be found in Paul Fischer, Astrid Hilbert, Fast detection of structural breaks, Proceedings of Compstat 2014.
License: GPL-2
URL: http://www2.imm.dtu.dk/~pafi/StructBreak/index.html
BugReports: pafi@dtu.dk
Packaged: 2014-07-20 18:56:52 UTC; Paul
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-20 21:17:32
Package: InSilicoVA
Type: Package
Title: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Version: 1.1.2
Date: 2016-03-29
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Depends: R (>= 2.15.0), rJava, coda, ggplot2
Description: Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-03-29 15:55:42 UTC; zehangli
Repository: CRAN
Date/Publication: 2016-03-29 18:59:29
Package: JGR
Version: 1.7-16
Title: JGR - Java GUI for R
Author: Markus Helbig <info@markushelbig.de>, Simon Urbanek, Ian Fellows
Maintainer: Markus Helbig <info@markushelbig.de>
Depends: R (>= 2.10), rJava (>= 0.9-5), JavaGD (>= 0.6), iplots (>=
1.1-7)
Suggests: XLConnect
RequiredLauncherGeneration: 2
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS. This can be downloaded from JGR website: http://rforge.net/JGR/
License: GPL-2
URL: http://rforge.net/JGR/
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-21 09:57:46