ampliQueso : Analysis of amplicon enrichment panels

Package: ampliQueso
Type: Package
Title: Analysis of amplicon enrichment panels
Version: 1.10.0
Date: 2013-08-06
Author: Alicja Szabelska <alicja.szabelska@up.poznan.pl>; Marek
Wiewiorka <marek.wiewiorka@gmail.com>; Michal Okoniewski
<michal@fgcz.ethz.ch>
Maintainer: Michal Okoniewski <michal@fgcz.ethz.ch>
Depends: R (>= 2.15.0), rnaSeqMap (>= 2.17.1), knitr, rgl, ggplot2,
gplots, parallel, doParallel, foreach,
VariantAnnotation, genefilter, statmod, xtable
Imports: edgeR, DESeq, samr
Suggests:
Description: The package provides tools and reports for the analysis of
amplicon sequencing panels, such as AmpliSeq
License: GPL-2
Collate: compareCoverages.R getCountTable.R getSNP.R auxFunctions.R
compareCoveragesRegions.R runAQReport.R getCamelTests.R
biocViews: ReportWriting, Transcription, GeneExpression,
DifferentialExpression, Sequencing, RNASeq, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 05:07:46 UTC; biocbuild