R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 3 of 3 found.
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mpMap : Multi-parent RIL genetic analysis

Package: mpMap
Type: Package
Title: Multi-parent RIL genetic analysis
Version: 1.14
Date: 2012-06-06
Author: Emma Huang
Maintainer: Emma Huang <Emma.Huang@csiro.au>
Description: Tools for constructing linkage maps, reconstructing
haplotypes, estimating linkage disequilibrium and QTL mapping
in multi-parent RIL designs (e.g. MAGIC)
License: GPL-2
LazyLoad: yes
Depends: gdata, seriation, qtl, wgaim
Suggests: aod, asreml, happy.hbrem, Heatplus, MASS, VPdtw, lattice
Collate: 'add3pt.R' 'calc.genoprob2.R' 'calcmpprob.R' 'check-ped.R'
'check-QTL.R' 'clean.mpcross.R' 'cleanmap.R' 'cleanrf.R'
'combine-chr.R' 'combine-ibd.R' 'combine-ld.R' 'combine-rf.R'
'compare-orders.R' 'compute-bnld.R' 'compute-bnrf.R'
'computemap.R' 'convertped.R' 'CR-calcLD.R' 'CR-cross.R'
'CR-estrf.R' 'CR-gen-geno.R' 'fill.R' 'fillmiss.R' 'findqtl2.R'
'fit.mpqtl.R' 'gen4ped.R' 'gen8ped.R' 'generate-error.R'
'generate-obs.R' 'generate-pheno.R' 'getpval.R' 'mapcomp.R'
'maporder.R' 'mp-mapdist.R' 'mpadd.R' 'mpcalcld.R' 'mpcross.R'
'mpestrf.R' 'mpgroup.R' 'mpIM.R' 'mpMap-output.R' 'mporder.R'
'mpprob.R' 'mpsegrat.R' 'nai.R' 'plot.mpcross.R'
'plot.mpprob.R' 'plot.mpqtl.R' 'plotlink.map.R'
'print.mapcomp.R' 'print.mpcross.R' 'print.mpprob.R'
'print.mpqtl.R' 'qtlmap.R' 'read.mpcross.R'
'reorgRIgenoprob2.R' 'sim.mpcross.R' 'sim.mpped.R'
'sim.sigthr.R' 'subset.mpcross.R' 'subset.mpprob.R'
'summary.mpcross.R' 'summary.mpprob.R' 'summary.mpqtl.R'
'supportinterval.R' 'waldTests.R'
Packaged: 2012-06-06 04:42:08 UTC; hua032
Repository: CRAN
Date/Publication: 2012-06-06 05:59:03

● Data Source: CranContrib
● 0 images, 38 functions, 0 datasets
● Reverse Depends: 0

DendSer : Dendrogram seriation: ordering for visualisation

Package: DendSer
Version: 1.0.1
Date: 2013-09-09
Author: Catherine B. Hurley and Denise Earle
Maintainer: Catherine Hurley <catherine.hurley@nuim.ie>
Title: Dendrogram seriation: ordering for visualisation
Description: Re-arranges a dendrogram to optimize visualisation-based cost functions
Depends: gclus, seriation
License: GPL-2
Packaged: 2013-09-09 18:11:01 UTC; catherin
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-09-09 21:15:20

● Data Source: CranContrib
● 4 images, 5 functions, 0 datasets
● Reverse Depends: 0

ClusteredMutations : Location and Visualization of Clustered Somatic Mutations

Package: ClusteredMutations
Version: 1.0.1
Date: 2016-04-28
Title: Location and Visualization of Clustered Somatic Mutations
Authors@R: person("David", "Lora", email = "david@h12o.es", role = c("aut", "cre"))
Depends: seriation
Description: Identification and visualization of groups of closely spaced mutations in the DNA sequence of cancer genome. The extremely mutated zones are searched in the symmetric dissimilarity matrix using the anti-Robinson matrix properties. Different data sets are obtained to describe and plot the clustered mutations information.
License: GPL-3
Packaged: 2016-04-28 15:54:35 UTC; david
Author: David Lora [aut, cre]
Maintainer: David Lora <david@h12o.es>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-29 07:44:36

● Data Source: CranContrib
● 3 images, 4 functions, 1 datasets
● Reverse Depends: 0