Package: BitSeq
Type: Package
Depends: Rsamtools, zlibbioc
Imports: S4Vectors, IRanges
LinkingTo: Rsamtools (>= 1.19.38), zlibbioc
Suggests: edgeR, DESeq, BiocStyle
Title: Transcript expression inference and differential expression
analysis for RNA-seq data
Version: 1.16.0
Date: 2014-10-03
Author: Peter Glaus, Antti Honkela and Magnus Rattray
Maintainer: Antti Honkela <antti.honkela@hiit.fi>, Panagiotis Papastamoulis <panagiotis.papastamoulis@manchester.ac.uk>
Description: The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.
License: Artistic-2.0 + file LICENSE
Packaged: 2016-05-04 04:30:02 UTC; biocbuild
biocViews: GeneExpression, DifferentialExpression, Sequencing, RNASeq,
Bayesian, AlternativeSplicing, DifferentialSplicing,
Transcription
NeedsCompilation: yes
providing 
.