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Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.12.0
Date: 2015-06-18
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katjah@stanford.edu>
Depends: R (>= 2.15.2), methods, S4Vectors, IRanges (>= 1.17.24),
GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, SummarizedExperiment, rtracklayer,
parallel, betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
NeedsCompilation: no
Packaged: 2016-05-04 04:57:47 UTC; biocbuild
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providing 
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