CAGEr : Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Package: CAGEr
Title: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing
data for precise mapping of transcription start sites and
promoterome mining
Version: 1.14.0
Date: 04-27-2016
Author: Vanja Haberle, Department of Biology, University of Bergen, Norway <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>
Imports: utils, Rsamtools, GenomicRanges (>= 1.23.16), IRanges (>=
2.5.27), data.table, beanplot, rtracklayer, som, VGAM
Depends: methods, R (>= 2.15.0), BSgenome
Suggests: BSgenome.Drerio.UCSC.danRer7, FANTOM3and4CAGE
Enhances: parallel
Description: Preprocessing of CAGE sequencing data, identification and normalization of transcription start sites and downstream analysis of transcription start sites clusters (promoters).
License: GPL-3
biocViews: Preprocessing, Sequencing, Normalization,
FunctionalGenomics, Transcription, GeneExpression, Clustering,
Visualization
Collate: AllClasses.R GetMethods.R ImportFunctions.R ImportMethods.R
CorrelationMethods.R ExportFunctions.R ExportMethods.R
MergingMethods.R NormalizationFunctions.R
NormalizationMethods.R ExpressionProfilingMethods.R
ClusteringFunctions.R ClusteringMethods.R
CumulativeDistributionFunctions.R
CumulativeDistributionMethods.R QuantileWidthFunctions.R
QuantileWidthMethods.R AggregationFunctions.R
AggregationMethods.R ShiftingFunctions.R ShiftingMethods.R
NeedsCompilation: no
Packaged: 2016-05-04 04:53:16 UTC; biocbuild