CNEr : CNE Detection and Visualization

Package: CNEr
Version: 1.8.2
Date: 2016-04-12
Title: CNE Detection and Visualization
Description: Large-scale identification and advanced visualization
of sets of conserved noncoding elements.
Author: Ge Tan <ge.tan09@imperial.ac.uk>
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
Imports: Biostrings (>= 2.33.4), RSQLite (>= 0.11.4), GenomeInfoDb (>=
1.1.3), GenomicRanges (>= 1.23.16), rtracklayer (>= 1.25.5),
XVector (>= 0.5.4), DBI (>= 0.2-7), GenomicAlignments (>= 1.1.9),
methods, S4Vectors (>= 0.9.25), IRanges (>= 2.5.27), readr (>=
0.2.2), BiocGenerics, tools, parallel
Depends: R (>= 3.2.2)
Suggests: Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat
LinkingTo: S4Vectors, IRanges, XVector
VignetteBuilder: knitr
License: GPL-2 | file LICENSE
License_restricts_use: yes
URL: https://github.com/ge11232002/CNEr
BugReports: https://github.com/ge11232002/CNEr/issues
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: GRangePairs-class.R AllGenerics.R AllClasses.R utils.R
ceScan.R plot.R makeGeneDbFromUCSC.R io.R scoringMatrix.R
subAxt-methods.R Axt-methods.R DB.R AssemblyStats.R GRB.R
WholeGenomeAlignment.R
Packaged: 2016-05-16 04:18:07 UTC; biocbuild