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Package: InteractionSet
Version: 1.0.4
Date: 2016-06-14
Title: Base Classes for Storing Genomic Interaction Data
Author: Aaron Lun <alun@wehi.edu.au>, Malcolm Perry <mgperry32@gmail.com>,
Liz Ing-Simmons <liz.ing-simmons12@csc.mrc.ac.uk>
Maintainer: Aaron Lun <alun@wehi.edu.au>
Depends: R (>= 3.3.0), GenomicRanges, SummarizedExperiment (>= 1.1.6)
Imports: IRanges, S4Vectors (>= 0.9.24), GenomeInfoDb, BiocGenerics,
methods, Matrix
Suggests: testthat, knitr, rmarkdown, BiocStyle
biocViews: Infrastructure, DataRepresentation, Software, HiC
Description: Provides the GInteractions, InteractionSet and ContactMatrix
objects and associated methods for storing and manipulating genomic
interaction data from Hi-C and ChIA-PET experiments.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
Collate: ContactMatrix-class.R GInteractions-class.R
InteractionSet-class.R getset.R matching.R swapAnchors.R
GRanges-methods.R pairs.R conversion.R linearize.R
boundingBox.R distances.R overlaps.R linkOverlaps.R
Packaged: 2016-06-15 06:02:09 UTC; biocbuild
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providing 
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