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Package: RIPSeeker
Type: Package
Title: RIPSeeker: a statistical package for identifying
protein-associated transcripts from RIP-seq experiments
Version: 1.12.0
Date: 2013-Apr-13
Author: Yue Li
Maintainer: Yue Li <yueli@cs.toronto.edu>
Description: Infer and discriminate RIP peaks from RIP-seq alignments
using two-state HMM with negative binomial emission
probability. While RIPSeeker is specifically tailored for
RIP-seq data analysis, it also provides a suite of
bioinformatics tools integrated within this self-contained
software package comprehensively addressing issues ranging from
post-alignments processing to visualization and annotation.
Depends: R (>= 2.15), methods, S4Vectors (>= 0.9.25), IRanges,
GenomicRanges, SummarizedExperiment, Rsamtools,
GenomicAlignments, rtracklayer
Suggests: biomaRt, ChIPpeakAnno, parallel, GenomicFeatures
License: GPL-2
URL: http://www.cs.utoronto.ca/~yueli/software.html
Lazyload: yes
Packaged: 2016-05-04 04:46:29 UTC; biocbuild
biocViews: Sequencing, RIPSeq
NeedsCompilation: no
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providing 
.