Last data update: 2014.03.03

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ShortRead : FASTQ input and manipulation

Package: ShortRead
Type: Package
Title: FASTQ input and manipulation
Version: 1.30.0
Author: Martin Morgan, Michael Lawrence, Simon Anders
Maintainer: Bioconductor Package Maintainer
Description: This package implements sampling, iteration, and input of
FASTQ files. The package includes functions for filtering and
trimming reads, and for generating a quality assessment report.
Data are represented as DNAStringSet-derived objects, and
easily manipulated for a diversity of purposes. The package
also contains legacy support for early single-end, ungapped
alignment formats.
License: Artistic-2.0
LazyLoad: yes
Depends: BiocGenerics (>= 0.11.3), BiocParallel, Biostrings (>=
2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
Imports: Biobase, S4Vectors (>= 0.7.1), IRanges (>= 2.3.7),
GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
methods, zlibbioc, lattice, latticeExtra,
Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
biocViews: DataImport, Sequencing, QualityControl
NeedsCompilation: yes
Packaged: 2016-05-04 03:09:08 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: DataImport, QualityControl, Sequencing
28 images, 62 functions, 0 datasets
Reverse Depends: 13