VanillaICE : A Hidden Markov Model for high throughput genotyping arrays

Package: VanillaICE
Version: 1.34.0
Title: A Hidden Markov Model for high throughput genotyping arrays
Author: Robert Scharpf <rscharpf@jhu.edu>, Kevin Scharpf, and Ingo Ruczinski
<ingo@jhsph.edu>
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Description: Hidden Markov Models for characterizing chromosomal alterations in
high throughput SNP arrays.
Date: Sat Sep 27 11:46:03 EDT 2014
Depends: R (>= 3.0.0), BiocGenerics (>= 0.13.6), GenomicRanges (>=
1.19.47), SummarizedExperiment (>= 0.2.0)
Imports: Biobase, S4Vectors (>= 0.9.25), IRanges (>= 1.14.0),
oligoClasses (>= 1.31.1), foreach, matrixStats, data.table,
grid, lattice, methods, GenomeInfoDb, crlmm, tools, stats,
utils, BSgenome.Hsapiens.UCSC.hg18
Suggests: RUnit, SNPchip, human610quadv1bCrlmm, ArrayTV
Collate: 'AllClasses.R' 'AllGenerics.R' 'datasets.R' 'defunct.R'
'functions.R' 'help.R' 'hmm-methods.R' 'methods-ArrayViews.R'
'methods-CopyNumScanParams.R' 'methods-EmissionParam.R'
'methods-FilterParam.R' 'methods-HMM.R' 'methods-HMMList.R'
'methods-HmmGRanges.R' 'methods-HmmParam.R'
'methods-HmmTrellisParam.R' 'methods-IdiogramParams.R'
'methods-LogLik.R' 'methods-SnpArrayExperiment.R'
'methods-SnpDataFrame.R' 'methods-TransitionParam.R'
'methods-Viterbi.R' 'updates.R' 'zzz.R'
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
License: LGPL-2
LazyLoad: yes
biocViews: CopyNumberVariation
Roxygen: list(wrap=FALSE)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-04 03:03:20 UTC; biocbuild