Last data update: 2014.03.03

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WhopGenome : High-Speed Processing of VCF, FASTA and Alignment Data

Package: WhopGenome
Type: Package
Title: High-Speed Processing of VCF, FASTA and Alignment Data
Version: 0.9.3
Date: 2015-09-08
Author: Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]
Authors@R: c( person("Ulrich", "Wittelsbuerger", role = c("aut", "cre"),email = ""),
person("Heng", "Li", role = "ctb"),
person("Bob", "Handsaker", role = "ctb") )
Maintainer: Ulrich Wittelsbuerger <>
Depends: R (>= 1.8.0)
Suggests: RMySQL, DBI, AnnotationDbi
Description: Provides very fast access to whole genome, population scale variation data
from VCF files and sequence data from FASTA-formatted files.
It also reads in alignments from FASTA, Phylip, MAF and other file formats.
Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
License: GPL (>= 2)
SystemRequirements: zlib headers and library
NeedsCompilation: yes
LazyLoad: yes
Copyright: inst/COPYRIGHTS
Packaged: 2015-09-08 15:08:52 UTC; uli
Repository: CRAN
Date/Publication: 2015-09-08 19:51:16

● Data Source: CranContrib
● 0 images, 122 functions, 0 datasets
Reverse Depends: 1