exomeCopy : Copy number variant detection from exome sequencing read depth

Package: exomeCopy
Type: Package
Title: Copy number variant detection from exome sequencing read depth
Version: 1.18.0
Date: 2016-02-11
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Detection of copy number variants (CNV) from exome
sequencing samples, including unpaired samples. The package
implements a hidden Markov model which uses positional
covariates, such as background read depth and GC-content, to
simultaneously normalize and segment the samples into regions
of constant copy count.
License: GPL (>= 2)
LazyLoad: yes
Imports: stats4, methods, GenomeInfoDb
Depends: IRanges (>= 2.5.27), GenomicRanges (>= 1.23.16), Rsamtools
Suggests: Biostrings
biocViews: CopyNumberVariation, Sequencing, Genetics
NeedsCompilation: yes
Packaged: 2016-05-04 04:18:09 UTC; biocbuild