flowWorkspace : Infrastructure for representing and interacting with the gated cytometry

Package: flowWorkspace
Type: Package
Title: Infrastructure for representing and interacting with the gated
cytometry
Version: 3.18.8
Date: 2011-06-10
Author: Greg Finak, Mike Jiang
Maintainer: Greg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
Description: This package is designed to facilitate comparison of automated
gating methods against manual gating done in flowJo. This package allows
you to import basic flowJo workspaces into BioConductor and replicate the
gating from flowJo using the flowCore functionality. Gating hierarchies,
groups of samples, compensation, and transformation are performed so that
the output matches the flowJo analysis.
License: Artistic-2.0
LazyLoad: yes
Imports: Biobase, BiocGenerics, graph, graphics, lattice, methods,
stats, stats4, utils, RBGL, XML, tools, gridExtra, Rgraphviz,
data.table, dplyr, latticeExtra, Rcpp, RColorBrewer, stringr,
scales
Collate: 'AllGenerics.R' 'AllClasses.R' 'GatingHierarchy_Methods.R'
'GatingSet_Methods.R' 'GatingSetList_Methods.R' 'RcppExports.R'
'filterObject_Methods.R' 'add_Methods.R'
'flowJoWorkspace_Methods.R' 'flow_trans.R' 'merge_GatingSet.R'
'setGate_Methods.R' 'utils.R' 'zzz.R'
Depends: R (>= 2.16.0), flowCore (>= 1.37.8), flowViz (>=
1.29.27), ncdfFlow (>= 2.17.4), gridExtra
biocViews: FlowCytometry, DataImport, Preprocessing, DataRepresentation
Suggests: testthat, flowWorkspaceData, RSVGTipsDevice, knitr, ggcyto
LinkingTo: Rcpp, BH(>= 1.60.0-1)
VignetteBuilder: knitr
SystemRequirements: xml2, GNU make
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-06-22 02:57:25 UTC; biocbuild