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Package: genefu
Type: Package
Title: Computation of Gene Expression-Based Signatures in Breast Cancer
Version: 2.4.2
Date: 2015-10-28
Description: Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>, Markus Schroeder <markus.schroeder@ucdconnect.ie>
biocViews: DifferentialExpression, GeneExpression, Visualization,
Clustering, Classification
Depends: survcomp, mclust, limma, biomaRt, iC10, AIMS, R (>= 2.10)
Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ,
breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
Imports: amap
VignetteBuilder: knitr
License: Artistic-2.0
URL: http://www.pmgenomics.ca/bhklab/software/genefu
LazyData: yes
NeedsCompilation: no
Packaged: 2016-05-16 02:51:30 UTC; biocbuild
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providing 
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