genoset : A RangedSummarizedExperiment with methods for copy number analysis

Package: genoset
Type: Package
Title: A RangedSummarizedExperiment with methods for copy number
analysis
Version: 1.28.2
Date: 2016-04-12
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: GenoSet provides an extension of the RangedSummarizedExperiment class
with additional API
features. This class provides convenient and fast methods for working with
segmented genomic data. Additionally,
GenoSet provides the class RleDataFrame which stores runs of data along the
genome for multiple samples and provides very fast summaries of arbitrary
row sets (regions of the genome).
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.10), BiocGenerics (>= 0.11.3), GenomicRanges (>=
1.17.19), SummarizedExperiment (>= 1.1.6)
Imports: S4Vectors (>= 0.9.25), GenomeInfoDb (>= 1.1.3), IRanges (>=
2.5.12), methods, graphics
Suggests: RUnit, knitr, BiocStyle, rmarkdown, DNAcopy, stats, BSgenome,
Biostrings
Enhances: parallel
ByteCompile: TRUE
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
CopyNumberVariation
Collate: 'genoset-class.R' 'RleDataFrame-class.R'
'RleDataFrame-methods.R' 'bounds.R' 'deprecated.R' 'ordering.R'
'plots.R' 'rangeSummaries.R' 'segments.R'
'test_genoset_package.R' 'utils.R' 'zzz.R'
VignetteBuilder: knitr
URL: https://github.com/phaverty/genoset
Packaged: 2016-05-16 02:50:56 UTC; biocbuild
RoxygenNote: 5.0.1
NeedsCompilation: yes