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Package: minfi
Version: 1.18.2
Title: Analyze Illumina's methylation arrays
Description: Tools for analyzing and visualizing Illumina's methylation array data.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
email = "kasperdanielhansen@gmail.com"),
person("Martin", "Aryee", role = "aut"),
person(c("Rafael", "A."), "Irizarry", role = "aut"),
person(c("Andrew", "E."), "Jaffe", role = "ctb"),
person("Jovana", "Maksimovic", role = "ctb"),
person(c("E.", "Andres"), "Houseman", role = "ctb"),
person("Jean-Philippe", "Fortin", role = "ctb"),
person("Tim", "Triche", role = "ctb"),
person(c("Shan", "V."), "Andrews", role = "ctb"))
Depends: methods, BiocGenerics (>= 0.15.3), Biobase (>= 2.17.8),
lattice, GenomicRanges, SummarizedExperiment (>= 1.1.6),
Biostrings, bumphunter (>= 1.1.9)
Suggests: IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
minfiData (>= 0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit,
digest, BiocStyle, knitr, rmarkdown
Imports: S4Vectors, GenomeInfoDb, IRanges, beanplot, RColorBrewer,
nor1mix, siggenes, limma, preprocessCore, illuminaio,
matrixStats (>= 0.50.0), mclust, genefilter, nlme, reshape,
MASS, quadprog, data.table, GEOquery, stats, grDevices,
graphics, utils
Collate: generics.R mset.R rset.R rgset.R gmset.R grset.R utils.R
manifest.R anno.R minfiQC.R getSex.R dmr.R blocks.R plot.R
plotBetasByType.R preprocess.R preprocessSwan.R
preprocessQuantile.R preprocessNoob.R preprocessFunnorm.R qc.R
read.450k.R read.meth.R read.geo.R read.manifest.R bumphunter.R
estimateCellCounts.R gaphunter.R compartments.R
VignetteBuilder: knitr
License: Artistic-2.0
URL: https://github.com/kasperdanielhansen/minfi
BugReports: https://github.com/kasperdanielhansen/minfi/issues
LazyData: yes
biocViews: DNAMethylation, Microarray, TwoChannel, DataImport,
Preprocessing, QualityControl
NeedsCompilation: no
Packaged: 2016-05-16 03:05:11 UTC; biocbuild
Author: Kasper Daniel Hansen [cre, aut],
Martin Aryee [aut],
Rafael A. Irizarry [aut],
Andrew E. Jaffe [ctb],
Jovana Maksimovic [ctb],
E. Andres Houseman [ctb],
Jean-Philippe Fortin [ctb],
Tim Triche [ctb],
Shan V. Andrews [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
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providing 
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