pasilla : Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.

Package: pasilla
Title: Data package with per-exon and per-gene read counts of RNA-seq
samples of Pasilla knock-down by Brooks et al., Genome Research
2011.
Version: 0.12.0
Author: Wolfgang Huber, Alejandro Reyes
Maintainer: Alejandro Reyes <reyes@embl.de>
Description: This package provides per-exon and per-gene read counts
computed for selected genes from RNA-seq data that were presented in
the article "Conservation of an RNA regulatory map between Drosophila
and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit
S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub
2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi
knockdown of Pasilla, the Drosophila melanogaster ortholog of
mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette
describes how the data provided here were derived from the RNA-Seq
read sequence data that is provided by NCBI Gene Expression Omnibus
under accession numbers GSM461176 to GSM461181
biocViews: ExperimentData, Genome, Drosophila_melanogaster_Data,
RNASeqData
License: LGPL
Suggests: locfit, edgeR, xtable, DEXSeq, DESeq
NeedsCompilation: no
Packaged: 2016-05-07 20:19:43 UTC; biocbuild