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Package: seqPattern
Title: Visualising oligonucleotide patterns and motif occurrences
across a set of sorted sequences
Version: 1.4.0
Date: 08-05-2015
Author: Vanja Haberle <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>
Imports: Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
Depends: methods, R (>= 2.15.0)
Suggests: BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics,
BiocStyle
Enhances: parallel
Description: Visualising oligonucleotide patterns and sequence motifs
occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.
License: GPL-3
biocViews: Visualization, SequenceMatching
Collate: MotifScanningFunctions.R MotifScanningMethods.R
PatternOccurrenceFunctions.R PatternOccurrenceMethods.R
PlottingFunctions.R PlottingMethods.R
NeedsCompilation: no
Packaged: 2016-05-04 06:03:22 UTC; biocbuild
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providing 
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