Package: metaMix
Title: Bayesian Mixture Analysis for Metagenomic Community Profiling
Version: 0.2
Author: Sofia Morfopoulou <sofia.morfopoulou.10@ucl.ac.uk>
Maintainer: Sofia Morfopoulou <sofia.morfopoulou.10@ucl.ac.uk>
Depends: R (>= 3.0.1)
Imports: data.table (>= 1.9.2), Matrix, gtools, Rmpi, ggplot2
Suggests: knitr
VignetteBuilder: knitr
Description: Resolves complex metagenomic mixtures by analysing
deep sequencing data, using a mixture model based approach.
The use of parallel Monte Carlo Markov chains for the exploration
of the species space enables the identification of the set
of species more likely to contribute to the mixture.
License: GPL-3
LazyData: true
SystemRequirements: Open MPI (>=1.4.3)
Packaged: 2015-03-15 12:32:53 UTC; psofaki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-15 14:03:01
Package: metabolomics
Type: Package
Title: Analysis of Metabolomics Data
Version: 0.1.4
Date: 2014-12-27
Author: Alysha M De Livera and Jairus B Bowne
Maintainer: Alysha M De Livera <alyshad@unimelb.edu.au>
Description: A collection of functions to aid in the statistical analysis of metabolomic data
License: GPL-2 | GPL-3
LazyLoad: yes
Depends: limma, crmn, gplots, R (>= 3.1.0)
Packaged: 2014-12-29 18:19:26 UTC; alyshad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-29 19:25:29
Package: metacom
Type: Package
Title: Analysis of the 'Elements of Metacommunity Structure'
Version: 1.4.4
Date: 2016-4-11
Author: Tad Dallas
Depends: vegan (>= 2.2-1)
Suggests: testthat
Maintainer: Tad Dallas <tdallas@uga.edu>
Description: Functions to analyze coherence, boundary clumping, and turnover
following the pattern-based metacommunity analysis of Leibold and Mikkelson
2002. The package also includes functions to visualize ecological networks, and
to calculate modularity as a replacement to boundary clumping.
LazyLoad: yes
LazyData: yes
License: GPL-2
BugReports: https://github.com/taddallas/metacom/issues
URL: https://github.com/taddallas/metacom
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-13 16:12:59 UTC; drakelab
Repository: CRAN
Date/Publication: 2016-04-13 21:35:15
Package: metafolio
Type: Package
Title: Metapopulation simulations for conserving salmon through
portfolio optimization
Version: 0.1.0
Date: 2014-07-09
Authors@R: c(person(c("Sean", "C."), "Anderson", email =
"sean@seananderson.ca", role = c("aut", "cre")),
person(c("Jonathan", "W."), "Moore", role = "ctb"),
person(c("Michelle", "M."), "McClure", role = "ctb"),
person(c("Nicholas", "K."), "Dulvy", role = "ctb"),
person(c("Andrew", "B."), "Cooper", role = "ctb"))
Description: The metafolio R package is a tool to simulate salmon
metapopulations and apply financial portfolio optimization concepts. The
package accompanies the paper 'Portfolio conservation of metapopulations
under climate change'. See citation("metafolio").
Maintainer: Sean C. Anderson <sean@seananderson.ca>
License: GPL-2
URL: http://github.com/seananderson/metafolio
BugReports: http://github.com/seananderson/metafolio/issues
VignetteBuilder: knitr
Depends: R (>= 3.1.0)
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp (>= 0.11.2), plyr, colorspace, MASS
Suggests: knitr, devtools, TeachingDemos, RColorBrewer, reshape2
Packaged: 2014-07-10 05:35:22 UTC; seananderson
Author: Sean C. Anderson [aut, cre],
Jonathan W. Moore [ctb],
Michelle M. McClure [ctb],
Nicholas K. Dulvy [ctb],
Andrew B. Cooper [ctb]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-07-10 08:45:42
Package: metafor
Version: 1.9-8
Date: 2015-09-28
Title: Meta-Analysis Package for R
Authors@R: person("Wolfgang", "Viechtbauer", email = "wvb@metafor-project.org", role = c("aut","cre"))
Depends: R (>= 3.2.2), Matrix
Imports: stats, utils, graphics, grDevices, methods
Suggests: lme4, numDeriv, minqa, nloptr, dfoptim, ucminf, CompQuadForm, mvtnorm, Formula, R.rsp, testthat, BiasedUrn, survival, Epi, igraph, multcomp, plyr
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
License: GPL (>= 2)
ByteCompile: TRUE
LazyData: TRUE
Encoding: UTF-8
VignetteBuilder: R.rsp
URL: http://www.metafor-project.org
NeedsCompilation: no
Packaged: 2015-09-28 15:08:19 UTC; Wolfgang
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>
Repository: CRAN
Date/Publication: 2015-09-28 17:40:48
Package: metafuse
Type: Package
Title: Fused Lasso Approach in Regression Coefficient Clustering
Version: 1.0-1
Date: 2015-11-06
Author: Lu Tang, Peter X.K. Song
Maintainer: Lu Tang <lutang@umich.edu>
Description: For each covariate, cluster its coefficient effects across different data sets during
data integration. Supports Gaussian, binomial and Poisson regression models.
License: GPL-2
Imports: glmnet, Matrix, MASS
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-11-07 05:26:53 UTC; Lu
Date/Publication: 2015-11-07 07:24:15
providing 
.