Last data update: 2014.03.03

 R: Wrapper for plotSmoothed
plotChromosomeR Documentation

Wrapper for plotSmoothed

Description

This function is a wrapper for plotSmoothed, to make data subsetting easier

Usage

plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)

Arguments

gendata

numeric matrix or data.frame

chrompos

chrompos object with same numer of rows as gendata

chromosome

numeric, chromosme to show

dataselection

optional, subset of samples/columns in gendata

ylim

limits for plot

normalized.to

y-value(s) for line

grid

x-value(s) for line

smooth.lambda

smoothing parameter, see quantsmooth

interval

position of extra lines besides median, see plotSmoothed

...

extra arguments for plotSmoothed

Value

The function is used for its side effects

Author(s)

Jan Oosting

See Also

plotSmoothed, quantsmooth

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO