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Last data update: 2014.03.03

R: Plotting hybridsim objects

plot.hybridsim

R Documentation

Plotting hybridsim objects

Description

A hybridsim object can be plotted using the function plot.hybridsim, which is also used as the dedicated plot method. This function represents expected hybrid markers frequencies on a neutral sheet.

Usage

## S3 method for class 'hybridsim'
plot(x,hybrid = c("F1", "BxA", "BxB"), col = "lightgreen",
 shade = 0.8, markers = x$SelMarkers, ...)

Arguments

`x`	A `hybridsim` object.
`hybrid`	The hybrid classes to simulate: `"F1"`, `"BxA"` or `"BxB"`.
`col`	A specification for the default plotting color.
`shade`	A specification for the default alpha value.
`markers`	a numeric vector with markers to plot. By default markers under selection by `hybridsim` function.
`...`	Arguments to be passed to methods, such as graphical parameters (see `par`).

Author(s)

F. Balao fbalao@us.es, J.L. GarcÃa-CastaÃ±o

Examples

## simulate parentals and F1 hybrids
hybrids<-hybridsim(Nmarker=100, Na=30, Nb=30, Nf1=30, type="selection", S=1, Nsel=25, hybrid="F1")

plot.hybridsim(hybrids, hybrid="F1")

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(AFLPsim)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/AFLPsim/plot.hybridsim.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot.hybridsim
> ### Title: Plotting hybridsim objects
> ### Aliases: plot.hybridsim
> ### Keywords: hybridization simulation
> 
> ### ** Examples
> 
> ## simulate parentals and F1 hybrids
> hybrids<-hybridsim(Nmarker=100, Na=30, Nb=30, Nf1=30, type="selection", S=1, Nsel=25, hybrid="F1")
> 
> plot.hybridsim(hybrids, hybrid="F1")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>