Converting hybridsim object to a NewHybrids input file

Description

The function sim2newhybrids converts a AFLPsim object into a NewHybrids input file.

Usage

sim2newhybrids(x,filename)

Arguments

Value

a NewHybrids input file

Author(s)

F. Balao fbalao@us.es, J.L. García-Castaño

References

Anderson, E.C. 2008. Bayesian inference of species hybrids using multilocus dominant genetic markers. Philosophical transactions of the Royal Society of London. Series B, Biological Sciences 363: 2841-2850.

Anderson, E.C., & E.A. Thompson. 2002. A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160: 1217-1229.

See Also

sim2arlequin sim2bayescan sim2introgress sim2popgene sim2structure

Examples

## simulate hybrids
hybrids<-hybridsim(Nmarker=100,Na=30,Nb=30,Nf1=30, type="neutral", hybrid="all")

## convert to NewHybrids input file
sim2newhybrids(hybrids,filename="newhybridsinput.txt")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(AFLPsim)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/AFLPsim/sim2newhybrids.Rd_%03d_medium.png", width=480, height=480)
> ### Name: sim2newhybrids
> ### Title: Converting hybridsim object to a NewHybrids input file
> ### Aliases: sim2newhybrids
> ### Keywords: hybridization simulation
> 
> ### ** Examples
> 
> ## simulate hybrids
> hybrids<-hybridsim(Nmarker=100,Na=30,Nb=30,Nf1=30, type="neutral", hybrid="all")
########Neutral hybridization########> 
> ## convert to NewHybrids input file
> sim2newhybrids(hybrids,filename="newhybridsinput.txt")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>