R: Adaptive Semiparametric Regression with Simultaneous...
AdaptFitOS-package
R Documentation
Adaptive Semiparametric Regression with Simultaneous Confidence Bands
Description
Based on package AdaptFit, fits semiparametric regression models with spatially adaptive penalized splines and computes simultaneous confidence bands.
Particular differences to AdaptFit
include the availability of simultaneous confidence bands and B-spline basis functions and different functionality of the plot function. However, random effects, autocorrelations and interaction surfaces are not supported.
Further, only Gaussian responses are supported. Note that in contrast to AdaptFit, estimated curves are centered to have zero mean and dummies for categorical covariates are constructed automatically if
a variable is given as factor.
For computation of the critical value for simultaneous confidence bands based on Hotelling's volume-of-tube formula, some functions of the libtube library by Catherine Loader (see package locfit) are used.
See the references for details on the construction of the confidence bands.
Details
Package:
AdaptFitOS
Version:
0.42
Date:
2012-06-03
Depends:
MASS, nlme, cluster
Index:
asp2 Fit a semiparametric regression model with
spatially adaptive penalized
aspFormula An asp formula
aspHetero Estimate varying residual variance
fitted.asp Fitted values for semiparametric regression.
plot.asp Plots fitted curves or their derivatives
including simultaneous confidence bands
plot.scbm Plots fitted curves in a scbm object
including simultaneous confidence bands
predict.asp Semiparametric regression prediction.
residuals.asp Residuals for semiparametric regression.
scbM Calculate simultaneous confidence bands for
penalized splines
summary.asp Semiparametric regression summary
The function asp2() is used to fit the model. Using the resulting asp object, fitted curves or their derivatives can be plotted with plot.asp and information on the parametric effects can be printed using summary.
Author(s)
Manuel Wiesenfarth and Tatyana Krivobokova
Maintainer: Manuel Wiesenfarth <m.wiesenfarth at dkfz de>
References
Krivobokova, T., Crainiceanu, C.M. and Kauermann, G. (2008)
Fast Adaptive Penalized Splines.
Journal of Computational and Graphical Statistics, 17(1):1-20.
Krivobokova, T., Kneib, T., and Claeskens, G. (2010)
Simultaneous confidence bands for penalized spline estimators.
Journal of the American Statistical Association, 105(490):852-863.
Wiesenfarth, M., Krivobokova, T., Klasen, S., Sperlich, S. (2012).
Direct Simultaneous Inference in Additive Models and its Application to Model Undernutrition.
Journal of the American Statistical Association, 107(500): 1286-1296.