Light-weight AnnotationHub 3.0 Client

Description

Client to Bioconductor AnnotationHub 3.0 for discovery and retrieval of annotation resources.

Author(s)

Martin Morgan mtmorgan@fhcrc.org

Examples

packageDescription("AnnotationHub")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(AnnotationHub)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/AnnotationHub/AnnotationHub-package.Rd_%03d_medium.png", width=480, height=480)
> ### Name: AnnotationHub-package
> ### Title: Light-weight AnnotationHub 3.0 Client
> ### Aliases: AnnotationHub-package
> ### Keywords: package
> 
> ### ** Examples
> 
> packageDescription("AnnotationHub")
Package: AnnotationHub
Type: Package
Title: Client to access AnnotationHub resources
Version: 2.4.2
Authors@R: c(person("Martin", "Morgan",
        email="martin.morgan@roswellpark.org", role="cre"),
        person("Marc", "Carlson", role="ctb"), person("Dan",
        "Tenenbaum", role="ctb"), person("Sonali", "Arora",
        role="ctb"))
biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
Description: This package provides a client for the Bioconductor
        AnnotationHub web resource. The AnnotationHub web resource
        provides a central location where genomic files (e.g., VCF,
        bed, wig) and other resources from standard locations (e.g.,
        UCSC, Ensembl) can be discovered. The resource includes
        metadata about each resource, e.g., a textual description,
        tags, and date of modification. The client creates and manages
        a local cache of files retrieved by the user, helping with
        quick and reproducible access.
License: Artistic-2.0
Depends: BiocGenerics (>= 0.15.10)
Imports: utils, methods, grDevices, RSQLite, BiocInstaller,
        AnnotationDbi (>= 1.31.19), S4Vectors, interactiveDisplayBase,
        httr
Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
        Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
        rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
        Biostrings, SummarizedExperiment
Enhances: AnnotationHubData
Collate: AnnotationHubOption.R AllGenerics.R Hub-class.R db-utils.R
        .....
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-05-16 03:51:57 UTC; biocbuild
Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb],
        Sonali Arora [ctb]
Built: R 3.3.1; ; 2016-07-02 11:43:59 UTC; unix

-- File: /home/ddbj/local/lib64/R/library/AnnotationHub/Meta/package.rds 
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> dev.off()
null device 
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