File download location:
ftp://ftp.sanger.ac.uk/pub/gencode/. Gencode_human and
Gencode_mouse are used.
Files downloaded:
Code is currently specific for human and mouse. Files chosen for
download are described in AnnotationHubData:::.gencodeDescription().
Value
makeGencodeFastaAHM returns a list of AnnotationHubMetadata
instances. gencodeFastaToFaFile returns nothing.
Author(s)
Bioconductor Core Team.
See Also
updateResources
AnnotationHubMetadata
Examples
## updateResources() generates metadata, process records and
## pushes files to AWS S3 buckets.
## To run the GencodeFasta recipe specify
## 'preparerClasses = GencodeFastaImportPreparer'. The 'species' and 'release'
## arguments are passed to makeGencodeFastaAHM().
## Not run:
meta <- updateResources("/local/path",
BiocVersion = c("3.2", "3.3"),
preparerClasses = "GencodeFastaImportPreparer",
metadataOnly = TRUE, insert = FALSE,
justRunUnitTest = FALSE)
## End(Not run)