Last data update: 2014.03.03

R: Pairs plot of a BCE
pairs.bceR Documentation

Pairs plot of a BCE

Description

produces pairs plots of the random walks of the BCE.

Usage

## S3 method for class 'bce'
 pairs(x, sample = 1, gap = 0,upper.panel = NA,
  diag.panel = NA, ...)

Arguments

x

either a bce object or the random walk values (X) of the composition matrix.

sample

the sample number for which the pairs plot is to be drawn.

gap

Distance between subplots, in margin lines - a pairs parameter.

upper.panel

panel function to be used above the diagonal - the default writes the correlations.

diag.panel

panel function to be used on the diagonal - the default plots a histogram.

...

any other parameters passed to function pairs.

Author(s)

Karline Soetaert

See Also

BCE, summary.bce, plot.bce, export.bce

Examples

# bceOutput is an example output based on bceInput

pairs(bceOutput,sample=2,main="Station 2")

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(BCE)
Loading required package: FME
Loading required package: deSolve

Attaching package: 'deSolve'

The following object is masked from 'package:graphics':

    matplot

Loading required package: rootSolve
Loading required package: coda
Loading required package: limSolve
Loading required package: Matrix
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/BCE/pairs.bce.Rd_%03d_medium.png", width=480, height=480)
> ### Name: pairs.bce
> ### Title: Pairs plot of a BCE
> ### Aliases: pairs.bce
> ### Keywords: hplot
> 
> ### ** Examples
> 
> # bceOutput is an example output based on bceInput
> 
> pairs(bceOutput,sample=2,main="Station 2")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>