produces pairs plots of the random walks of the BCE.
Usage
## S3 method for class 'bce'
pairs(x, sample = 1, gap = 0,upper.panel = NA,
diag.panel = NA, ...)
Arguments
x
either a bce object or the random walk values (X)
of the composition matrix.
sample
the sample number for which the pairs plot is to be drawn.
gap
Distance between subplots, in margin lines - a pairs
parameter.
upper.panel
panel function to be used above the diagonal - the
default writes the correlations.
diag.panel
panel function to be used on the diagonal - the default
plots a histogram.
...
any other parameters passed to function pairs.
Author(s)
Karline Soetaert
See Also
BCE, summary.bce,
plot.bce, export.bce
Examples
# bceOutput is an example output based on bceInput
pairs(bceOutput,sample=2,main="Station 2")
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(BCE)
Loading required package: FME
Loading required package: deSolve
Attaching package: 'deSolve'
The following object is masked from 'package:graphics':
matplot
Loading required package: rootSolve
Loading required package: coda
Loading required package: limSolve
Loading required package: Matrix
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/BCE/pairs.bce.Rd_%03d_medium.png", width=480, height=480)
> ### Name: pairs.bce
> ### Title: Pairs plot of a BCE
> ### Aliases: pairs.bce
> ### Keywords: hplot
>
> ### ** Examples
>
> # bceOutput is an example output based on bceInput
>
> pairs(bceOutput,sample=2,main="Station 2")
>
>
>
>
>
> dev.off()
null device
1
>