Export near-cis fragment data of a Data4Cseq object

Description

This function is a simple helper function that writes the near-cis data of a Data4Cseq object as tab-separated file to hard disk.

Usage

exportVisualizationFragmentData(expData, fileName, fullData = FALSE)

Arguments

Value

A tab-separated file containing near-cis framgent data of a Data4Cseq object

Author(s)

Carolin Walter

Examples

  if(interactive()) {
    data(liverData)
    exportVisualizationFragmentData(liverData, "fetalLiverData.csv")
  }

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(Basic4Cseq)
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomicAlignments
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rsamtools
Loading required package: caTools

Attaching package: 'caTools'

The following object is masked from 'package:IRanges':

    runmean

The following object is masked from 'package:S4Vectors':

    runmean

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Basic4Cseq/exportVisualizationFragmentData.Rd_%03d_medium.png", width=480, height=480)
> ### Name: exportVisualizationFragmentData
> ### Title: Export near-cis fragment data of a 'Data4Cseq' object
> ### Aliases: exportVisualizationFragmentData
> ###   exportVisualizationFragmentData,Data4Cseq,character-method
> ### Keywords: exportVisualizationFragmentData
> 
> ### ** Examples
> 
> #  if(interactive()) {
>     data(liverData)
>     exportVisualizationFragmentData(liverData, "fetalLiverData.csv")
> #  }
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>