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Last data update: 2014.03.03

R: Construct complete graph

ConstructCompleteGraph

R Documentation

Construct complete graph

Description

This function construct complete graph by using all vertices and edges.

Usage

ConstructCompleteGraph(Vertices, Edges, BaseSize = 6, SaveFileName = "")

Arguments

`Vertices`	matrix. Vertices of constructed graphs, including real vertices and virtual vertices. The first column represents SNP ID or SNP-combination ID. The second column represents effect value. The third column represents the class of vertices, "1" -> real vertice, others -> virtual vertice.
`Edges`	matrix. Edges of constructed graphs.
`BaseSize`	numeric. Basic size of vertices in the graph. By default, BaseSize <- 6.
`SaveFileName`	character. Basic file name for saving figure. By default, SaveFileName <- "".

Value

None

Author(s)

Junliang Shang shangjunliang110@163.com

References

None

Examples

data(Vertices)
data(Edges)
ConstructCompleteGraph(Vertices, Edges, BaseSize = 6, SaveFileName = "")

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(CINOEDV)
Loading required package: R.matlab
R.matlab v3.5.1 (2016-03-27) successfully loaded. See ?R.matlab for help.

Attaching package: 'R.matlab'

The following objects are masked from 'package:base':

    getOption, isOpen

Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: ggplot2
Loading required package: reshape2
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/CINOEDV/ConstructCompleteGraph.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ConstructCompleteGraph
> ### Title: Construct complete graph
> ### Aliases: ConstructCompleteGraph
> 
> ### ** Examples
> 
> data(Vertices)
> data(Edges)
> ConstructCompleteGraph(Vertices, Edges, BaseSize = 6, SaveFileName = "")
dev.new(): using pdf(file="Rplots26.pdf")
> 
> 
> 
> 
> 
> dev.off()
png 
  2 
>