Retrieve simulated chains from model object.

Description

The method chains applied to a MixtureModel-derived class will return an object of class McmcChains that contains the chains for all simulated parameters. Typically, chains is called in conjunction with an accessor for one of these parameters.

Usage

chains(object)

## S4 method for signature 'MixtureModel'
chains(object)

Arguments

Value

The simulated chains.

Examples

theta.chain <- theta(chains(MarginalModelExample))
dim(theta.chain)
plot.ts(theta.chain, plot.type="single",
        col=seq_len(k(MarginalModelExample)))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(CNPBayes)
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb

Attaching package: 'CNPBayes'

The following object is masked from 'package:stats':

    sigma

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/CNPBayes/chains-method.Rd_%03d_medium.png", width=480, height=480)
> ### Name: chains
> ### Title: Retrieve simulated chains from model object.
> ### Aliases: chains chains,MixtureModel-method
> 
> ### ** Examples
> 
> theta.chain <- theta(chains(MarginalModelExample))
> dim(theta.chain)
[1] 5 3
> plot.ts(theta.chain, plot.type="single",
+         col=seq_len(k(MarginalModelExample)))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>