Create a trace plot of a parameter estimated by MCMC.

Description

Create a trace plot of a parameter estimated by MCMC.

Usage

tracePlot(object, name, ...)

## S4 method for signature 'BatchModel'
tracePlot(object, name, ...)

Arguments

Value

A traceplot of a parameter value

Examples

tracePlot(BatchModelExample, "theta")
tracePlot(BatchModelExample, "sigma")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(CNPBayes)
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb

Attaching package: 'CNPBayes'

The following object is masked from 'package:stats':

    sigma

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/CNPBayes/tracePlot-method.Rd_%03d_medium.png", width=480, height=480)
> ### Name: tracePlot
> ### Title: Create a trace plot of a parameter estimated by MCMC.
> ### Aliases: tracePlot tracePlot,BatchModel-method
> 
> ### ** Examples
> 
> tracePlot(BatchModelExample, "theta")
> tracePlot(BatchModelExample, "sigma")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>