This function prints and saves 2D and 3D plots of synergy/antagonism.

Description

This function prints and saves 2D and 3D plots of synergy/antagonism.

Usage

synAntPlot(processedData, xConcentration, yConcentration, xDrug, yDrug,
  cellLine)

Arguments

Value

Plot the values.

Author(s)

Muhammad kashif

Examples

dataFile <- system.file("/raw/processedData.csv", package="COMBIA")
procData <- read.csv( dataFile, header=FALSE)
xConc <- c(0.00,  0.20, 0.39, 0.78,  1.56,  3.12,  6.25, 12.50, 25.00, 50)
yConc <- c(128,  64,  32,  16,   8,   4,   2,   0)
xD <- "X_Drug"
yD <- "Y_Drug"
clN <- "myCell"
rslt <- synAntPlot(as.matrix(procData),xConc,yConc, xD, yD, clN)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(COMBIA)
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.

Attaching package: 'gdata'

The following object is masked from 'package:stats':

    nobs

The following object is masked from 'package:utils':

    object.size

The following object is masked from 'package:base':

    startsWith

Loading required package: lattice
Loading required package: latticeExtra
Loading required package: RColorBrewer
Loading required package: oro.nifti
oro.nifti 0.5.2
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/COMBIA/synAntPlot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: synAntPlot
> ### Title: This function prints and saves 2D and 3D plots of
> ###   synergy/antagonism.
> ### Aliases: synAntPlot
> 
> ### ** Examples
> 
> dataFile <- system.file("/raw/processedData.csv", package="COMBIA")
> procData <- read.csv( dataFile, header=FALSE)
> xConc <- c(0.00,  0.20, 0.39, 0.78,  1.56,  3.12,  6.25, 12.50, 25.00, 50)
> yConc <- c(128,  64,  32,  16,   8,   4,   2,   0)
> xD <- "X_Drug"
> yD <- "Y_Drug"
> clN <- "myCell"
> rslt <- synAntPlot(as.matrix(procData),xConc,yConc, xD, yD, clN)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>