plot correlation between log ChIP read counts and smoothing control counts in common binding sites.

Description

plot correlation between log ChIP counts and smoothing control counts in common binding sites.

Usage

	## S3 method for class 'ChIPComp'
plot(x,...)

Arguments

Value

Plot the correlation between ChIP sample and control sample

Author(s)

Hao Wu<hao.wu@emory.edu>, Li Chen <li.chen@emory.edu>

Examples

	data(seqData)
	plot(seqData)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> library(ChIPComp)
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: rtracklayer
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ChIPComp/plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot.ChIPComp
> ### Title: plot correlation between log ChIP read counts and smoothing
> ###   control counts in common binding sites.
> ### Aliases: plot.ChIPComp
> 
> ### ** Examples
> 
> 	data(seqData)
> 	plot(seqData)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>