Last data update: 2014.03.03

R: Pie Charts
pie1R Documentation

Pie Charts

Description

Draw a pie chart with percentage

Usage

pie1(x, labels = names(x), edges = 200, 
                  radius = 0.8, clockwise = FALSE, 
                  init.angle = if (clockwise) 90 else 0, 
                  density = NULL, angle = 45, 
                  col = NULL, border = NULL, lty = NULL, 
                  main = NULL, percentage=TRUE, rawNumber=FALSE, 
                  digits=3, cutoff=0.01, 
                  legend=FALSE, legendpos="topright", legendcol=2, 
                  radius.innerlabel = radius, ...)

Arguments

x

a vector of non-negative numerical quantities. The values in x are displayed as the areas of pie slices.

labels

one or more expressions or character strings giving names for the slices. Other objects are coerced by as.graphicsAnnot. For empty or NA (after coercion to character) labels, no label nor pointing line is drawn.

edges

the circular outline of the pie is approximated by a polygon with this many edges.

radius

the pie is drawn centered in a square box whose sides range from -1 to 1. If the character strings labeling the slices are long it may be necessary to use a smaller radius.

clockwise

logical indicating if slices are drawn clockwise or counter clockwise (i.e., mathematically positive direction), the latter is default.

init.angle

number specifying the starting angle (in degrees) for the slices. Defaults to 0 (i.e., "3 o'clock") unless clockwise is true where init.angle defaults to 90 (degrees), (i.e., "12 o'clock").

density

the density of shading lines, in lines per inch. The default value of NULL means that no shading lines are drawn. Non-positive values of density also inhibit the drawing of shading lines.

angle

the slope of shading lines, given as an angle in degrees (counter-clockwise).

col

a vector of colors to be used in filling or shading the slices. If missing a set of 6 pastel colours is used, unless density is specified when par("fg") is used.

border, lty

(possibly vectors) arguments passed to polygon which draws each slice.

main

an overall title for the plot.

percentage

logical. Add percentage in the figure or not. default TRUE.

rawNumber

logical. Instead percentage, add raw number in the figure or not. default FALSE.

digits

When set percentage as TRUE, how many significant digits are to be used for percentage. see format. default 3.

cutoff

When percentage is TRUE, if the percentage is lower than cutoff, it will NOT be shown. default 0.01.

legend

logical. Instead of lable, draw legend for the pie. default, FALSE.

legendpos, legendcol

legend position and legend columns. see legend

radius.innerlabel

position of percentage or raw number label relative to the circle.

...

graphical parameters can be given as arguments to pie. They will affect the main title and labels only.

Author(s)

Jianhong Ou

See Also

pie

Examples

pie1(1:5)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ChIPpeakAnno)
Loading required package: grid
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: Biostrings
Loading required package: XVector
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: VennDiagram
Loading required package: futile.logger

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ChIPpeakAnno/pie1.Rd_%03d_medium.png", width=480, height=480)
> ### Name: pie1
> ### Title: Pie Charts
> ### Aliases: pie1
> ### Keywords: misc
> 
> ### ** Examples
> 
> pie1(1:5)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>