Last data update: 2014.03.03

R: Correlation of the standard desviation and the mean of the...
degMVR Documentation

Correlation of the standard desviation and the mean of the abundance of a set of genes.

Description

Correlation of the standard desviation and the mean of the abundance of a set of genes.

Usage

degMV(g1,g2,pvalues,counts)

Arguments

g1

list of samples in group 1

g2

list of samples in group 2

pvalues

pvalues of DEG analysis

counts

matrix with counts for each samples and each gene. row number should be the same length than pvalues vector.

Value

ggplot2 object

Examples

data(DEGreportSet)
degMV(DEGreportSet$g1,DEGreportSet$g2,DEGreportSet$deg[,4],
    DEGreportSet$counts)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(DEGreport)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/DEGreport/degMV.Rd_%03d_medium.png", width=480, height=480)
> ### Name: degMV
> ### Title: Correlation of the standard desviation and the mean of the
> ###   abundance of a set of genes.
> ### Aliases: degMV
> 
> ### ** Examples
> 
> data(DEGreportSet)
> degMV(DEGreportSet$g1,DEGreportSet$g2,DEGreportSet$deg[,4],
+     DEGreportSet$counts)
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>