Last data update: 2014.03.03

R: plot the correlation between the rank according estimator and...
degPRR Documentation

plot the correlation between the rank according estimator and the rank according FC

Description

plot the correlation between the rank according estimator and the rank according FC

Usage

degPR(rank,colors)

Arguments

rank

output from degRank function

colors

colour used for each gene

Value

ggplot2 object

Examples

data(DEGreportSet)
degPR(DEGreportSet$rank)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(DEGreport)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/DEGreport/degPR.Rd_%03d_medium.png", width=480, height=480)
> ### Name: degPR
> ### Title: plot the correlation between the rank according estimator and
> ###   the rank according FC
> ### Aliases: degPR
> 
> ### ** Examples
> 
> data(DEGreportSet)
> degPR(DEGreportSet$rank)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>