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Last data update: 2014.03.03

R: Distribution of the standard desviation of DE genes compared...

degVB

R Documentation

Distribution of the standard desviation of DE genes compared to the background

Description

Distribution of the standard desviation of DE genes compared to the background

Usage

degVB(tags,g1,g2,counts,pop=400)

Arguments

`tags`	list of genes that are DE
`g1`	list of samples in group 1
`g2`	list of samples in group 2
`counts`	matrix with counts for each samples and each gene. Should be same length than pvalues vector.
`pop`	number of random samples taken for background comparison

Value

ggplot2 object

Examples

data(DEGreportSet)
detag <- row.names(DEGreportSet$deg[1:10,])
degVB(detag,DEGreportSet$g1,DEGreportSet$g2,DEGreportSet$counts)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(DEGreport)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/DEGreport/degVB.Rd_%03d_medium.png", width=480, height=480)
> ### Name: degVB
> ### Title: Distribution of the standard desviation of DE genes compared to
> ###   the background
> ### Aliases: degVB
> 
> ### ** Examples
> 
> data(DEGreportSet)
> detag <- row.names(DEGreportSet$deg[1:10,])
> degVB(detag,DEGreportSet$g1,DEGreportSet$g2,DEGreportSet$counts)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>