R: DESeq2 package for differential analysis of count data
DESeq2-package
R Documentation
DESeq2 package for differential analysis of count data
Description
The main functions for differential analysis are DESeq and
results. See the examples at DESeq for basic analysis steps.
Two transformations offered for count data are
the "regularized logarithm", rlog,
and varianceStabilizingTransformation.
For more detailed information on usage, see the package vignette, by typing
vignette("DESeq2"), or the workflow linked to on the first page
of the vignette. All support questions should be posted to the Bioconductor
support site: http://support.bioconductor.org.
Author(s)
Michael Love, Wolfgang Huber, Simon Anders
References
DESeq2 reference:
Michael I Love, Wolfgang Huber, Simon Anders: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 2014, 15:550. http://dx.doi.org/10.1186/s13059-014-0550-8