Simple allele frequency estimation

Description

Estimates allele frequencies from a database with DNA profiles

Usage

freqEst(x)

Arguments

Details

Computes the allele frequencies for a given database.

Value

Returns a list of probability vectors - one vector for each locus.

Author(s)

James Curran and Torben Tvedebrink

Examples

  data(dbExample)
  freqEst(dbExample)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(DNAtools)
Loading required package: Rsolnp
Loading required package: multicool
Loading required package: Rcpp
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/DNAtools/freqEst.Rd_%03d_medium.png", width=480, height=480)
> ### Name: freqEst
> ### Title: Simple allele frequency estimation
> ### Aliases: freqEst
> 
> ### ** Examples
> 
>   data(dbExample)
>   freqEst(dbExample)
$D16S539.1
allele
    10     11     12     13     14      8      9 
0.0195 0.2755 0.2860 0.2255 0.0020 0.0005 0.1910 

$D18S51.1
allele
    11     12     13     14     15     16   16.2     17     18     19     20 
0.0175 0.0955 0.0825 0.1705 0.1370 0.2390 0.0045 0.1535 0.0695 0.0035 0.0010 
    21 
0.0260 

$D19S433.1
allele
    11     12   12.2     13   13.2     14   14.2     15   15.2     16   16.2 
0.0030 0.0540 0.0010 0.2015 0.0065 0.3895 0.0505 0.1740 0.0635 0.0555 0.0010 

$D21S11.1
allele
    27     28     29     30   30.2     31   31.2     32   32.2   33.2   34.2 
0.0280 0.3940 0.2195 0.1620 0.0465 0.0695 0.0230 0.0040 0.0415 0.0075 0.0045 

$D2S1338.1
allele
    14     16     17     18     19     20     21     22     23     24     25 
0.0005 0.0420 0.1235 0.1335 0.1350 0.0920 0.0690 0.0070 0.1675 0.1015 0.1260 
    26 
0.0025 

$D3S1358.1
allele
    11     14     15     16     17     18     19 
0.0045 0.1365 0.3270 0.2675 0.1355 0.1150 0.0140 

$D8S1179.1
allele
    10     11     12     13     14     15     16      8 
0.0700 0.0695 0.2125 0.2915 0.1740 0.1030 0.0730 0.0065 

$FGA.1
allele
    18     19     20     21     22   22.2     23   23.2     24     25     26 
0.0040 0.0445 0.1560 0.1715 0.1435 0.0035 0.1310 0.0380 0.1600 0.0125 0.1250 
    27     29 
0.0005 0.0100 

$TH01.1
allele
    10      6      7      8      9    9.3 
0.0005 0.1525 0.2945 0.0910 0.1105 0.3510 

$vWA.1
allele
    13     14     15     16     17     18     19     20     21 
0.0005 0.1255 0.0915 0.2095 0.2860 0.2350 0.0475 0.0040 0.0005 

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>