Last data update: 2014.03.03

R: Prints the results from optim.relatedness()
print.dbOptimR Documentation

Prints the results from optim.relatedness()

Description

Prints the evaluated functions for the object function, best estimate of alpha and possibly list of variances.

Usage

## S3 method for class 'dbOptim'
print(x,var.list=FALSE,...)

Arguments

x

Object returned by optim.relatedness()

var.list

Logical. Whether the (long) list of variance components should be printed to the screen.

...

...

Details

Prints the summary details of the fit

Value

A dataframe with [theta,value] and a vector of fitted alpha parameters

Author(s)

James Curran and Torben Tvedebrink

See Also

optim.relatedness

Examples

  ## Not run: 
  ## Simulate some allele frequencies:
  freqs <-  replicate(10, { g = rgamma(n=10,scale=4,shape=3); g/sum(g)},
              simplify=FALSE)
  ## Load the sample database:
  data(dbExample)
  obs <- dbCompare(dbExample,trace=FALSE)$m
  C3 <- optim.relatedness(obs,theta0=0.0,theta1=0.03,probs=freqs,
          objFunction="C3",max.bisect=30,trace=TRUE)
  print(C3)
  
## End(Not run)

Results