Correlation matrix

Description

Plots a correlation matrix

Usage

ggcorplot(cor.mat,data=NULL,lines=TRUE,line.method=c("lm","loess"),type="points",
		alpha=.25,main="auto",var_text_size=5,
		cor_text_limits=c(5,25),level=.05)

Arguments

Author(s)

Mike Lawrence and Ian Fellows

See Also

cor.matrix qscatter_array

Examples

data(mtcars)
corr.mat1<-cor.matrix(variables=d(mpg,carb,carb+rnorm(length(carb))),,
	 data=mtcars,
	 test=cor.test,
	 method='spearman',
	alternative="two.sided",exact=FALSE)
	
p<-ggcorplot(corr.mat1,data = mtcars)
print(p)
## Not run: 

has.hex<-require("hexbin")
if(has.hex){
	data(diamonds)
	corr.mat<-cor.matrix(variables=d(price,carat,color),,
		 data=diamonds,
		 test=cor.test,
		 method='spearman',
		alternative="two.sided")

	p1 <- ggcorplot(cor.mat=corr.mat,data=diamonds,type="bins",
		cor_text_limits=c(5,15),
		lines=FALSE)
	print(p1)
	rm('corr.mat')

}

## End(Not run)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Deducer)
Loading required package: ggplot2
Loading required package: JGR
Loading required package: rJava
Loading required package: JavaGD
Loading required package: iplots

Please type JGR() to launch console. Platform specific launchers (.exe and .app) can also be obtained at http://www.rforge.net/JGR/files/.


Loading required package: car
Loading required package: MASS


Note Non-JGR console detected:
	Deducer is best used from within JGR (http://jgr.markushelbig.org/).
	To Bring up GUI dialogs, type deducer().

> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/Deducer/ggcorplot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ggcorplot
> ### Title: Correlation matrix
> ### Aliases: ggcorplot
> 
> ### ** Examples
> 
> data(mtcars)
> corr.mat1<-cor.matrix(variables=d(mpg,carb,carb+rnorm(length(carb))),,
+ 	 data=mtcars,
+ 	 test=cor.test,
+ 	 method='spearman',
+ 	alternative="two.sided",exact=FALSE)
> 	
> p<-ggcorplot(corr.mat1,data = mtcars)
> print(p)
> ## Not run: 
> ##D 
> ##D has.hex<-require("hexbin")
> ##D if(has.hex){
> ##D 	data(diamonds)
> ##D 	corr.mat<-cor.matrix(variables=d(price,carat,color),,
> ##D 		 data=diamonds,
> ##D 		 test=cor.test,
> ##D 		 method='spearman',
> ##D 		alternative="two.sided")
> ##D 
> ##D 	p1 <- ggcorplot(cor.mat=corr.mat,data=diamonds,type="bins",
> ##D 		cor_text_limits=c(5,15),
> ##D 		lines=FALSE)
> ##D 	print(p1)
> ##D 	rm('corr.mat')
> ##D 
> ##D }
> ## End(Not run)
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>