R Graphical Manual

Browse All

Last data update: 2014.03.03

R: Generate Basic Plot for ENMevaluate Output

eval.plot

R Documentation

Generate Basic Plot for ENMevaluate Output

Description

This function can be used to generate a basic plot of evaluation metrics generated by a call of ENMevaluate.

Usage

eval.plot(results, value = "delta.AICc", variance = NULL, legend = TRUE, 
	legend.position = "topright")

Arguments

`results`	A data.frame of results from `ENMevaluate`.
`value`	Character string of the column of `results` to use for plotting.
`variance`	Character string of the column of `results` to be used for error bars.
`legend`	logical; If `TRUE` (default), includes legend in plot with `fc`s.
`legend.position`	Character string for the placement of the legend.

Author(s)

Robert Muscarella <bob.muscarella@gmail.com>

Examples


data(enmeval_results)

par(mfrow=c(2,2))
eval.plot(enmeval_results@results, legend.position="topright")
eval.plot(enmeval_results@results, "Mean.AUC", )
eval.plot(enmeval_results@results, "Mean.AUC.DIFF", variance="Var.AUC.DIFF")
eval.plot(enmeval_results@results, "Mean.ORmin")

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ENMeval)
Loading required package: dismo
Loading required package: raster
Loading required package: sp
Loading required package: rJava
Loading required package: parallel
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/ENMeval/eval.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: eval.plot 
> ### Title: Generate Basic Plot for ENMevaluate Output
> ### Aliases: eval.plot
> 
> ### ** Examples
> 
> 
> data(enmeval_results)
> 
> par(mfrow=c(2,2))
> eval.plot(enmeval_results@results, legend.position="topright")
> eval.plot(enmeval_results@results, "Mean.AUC", )
> eval.plot(enmeval_results@results, "Mean.AUC.DIFF", variance="Var.AUC.DIFF")
> eval.plot(enmeval_results@results, "Mean.ORmin")
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>